2006

Asztalos BF , Schaefer EJ, Horvath KV, Cox CE, Skinner S, Gerrior J , Gorbach SL , and Wanke CA : Protease Inhibitor-based HAART, HDL, and CHD-Risk in HIV-Infected Patients. Atherosclerosis , 184(1):72-77, 2006.

Beckwith CG , Atunah-Jay S, Cohen J, Macalino G , Poshkus M , Rich JD, Flanigan TP, Lally MA . Feasibility and acceptability of rapid HIV testing in jail. In Press: AIDS Pt Care STDs 2006.

Boden, D., Pusch, O., Ramratnam, B. , (2006) Overcoming HIV-1 resistance to RNA interference. In press; Frontiers in Bioscience. [Invited review]

Jamieson, Denise; Paramsothy, Pangaja; Cu- Uvin , Susan ; Duerr, Ann; for the HIV Epidemiology Research Study Group * Vulvar, Vaginal, and Perianal Intraepithelial Neoplasia in Women With or at Risk for Human Immunodeficiency Virus. Obstetrics & Gynecology. 107(5):1023-1028, May 2006.

Kumarasamy N, Vallabhaneni S, Cecelia AJ, Yepthomi T, Balakrishnan P, Saghayam S, Flanigan TP , Carpenter CCJ , Solomon S, Mayer KH . Reasons for Modification of Generic Highly Active Antiretroviral Therapeutic Regimens among Patients in Southern India. Journal of Acquired Immune Deficiency Syndromes 41(1):53-58, 2006.

Flanigan, Timothy P.; Beckwith , Curt ; Carpenter, Charles C.J. Public Health Principles for the HIV Epidemic. New England Journal of Medicine. 354(8):877-878, February 23, 2006.

Sok P, Harwell JI , McGarvey ST, Lurie M , Lynen L, Flanigan T, Mayer KJ . Demographic and clinical characteristics among HIV-infected patients in Cambodia. AIDS Pat Care STD . 20(5):369-378, May 2006 .

Qui WQ, Price LL, Hibberd P , Buell J, Collins L, Griffith J, Leins D, Mwamburi DM , Rosenberg I, Smaldone L, Scott TM, Siegel RD, Summergrad P, Sun X, Wagner C, Wang L, Yee J, Tucker K, and Folstein M: Executive Dysfunction in Homebound Elderly with Diabetes. Accepted for Publication in the Journal of the American Geriatrics Society ; 54(3):496-501, March 2006

Rhee SY, Kantor R , Katzenstein DA, Camacho R, Morris L, Sirivichayakul S, Jorgensen L, Brigido LF, Schapiro JM, Shafer RW; International Non Subtype B HIV-1 Working Group. Related Articles, Links: HIV-1 pol mutation frequency by subtype and treatment experience: extension of the HIVseq program to seven non-B subtypes. AIDS . 21;20(5):643-51. Mar 2006.

Snoeck J, Kantor R , Shafer RW, Van Laethem K, Deforche K, Carvalho AP, Wynhoven B, Soares MA, Cane P, Clarke J, Pillay C, Sirivichayakul S, Ariyoshi K, Holguin A, Rudich H, Rodrigues R, Bouzas MB, Brun-Vezinet F, Reid C, Cahn P, Brigido LF, Grossman Z, Soriano V, Sugiura W, Phanuphak P, Morris L, Weber J, Pillay D, Tanuri A, Harrigan RP, Camacho R, Schapiro JM, Katzenstein D, Vandamme AM. Related Articles, Links. Discordances between interpretation algorithms for genotypic resistance to protease and reverse transcriptase inhibitors of human immunodeficiency virus are subtype dependent. Antimicrob Agents Chemother 50(2):694-701, Feb. 2006.

Martin, Troy M ; Morse, Gene D; Kurpewski, Jaclynn; Difrancesco, Robin; Caliendo, Angela M; Flanigan , Timothy P ; Tashima, Karen T ; Plasma and cerebrospinal pharmacokinetics and pharmacodynamics in subjects taking lopinavir/ritonavir. AIDS. 20(7):1085-1087, April 24, 2006.

Margolis, Andrew D.; MacGowan, Robin J.; Grinstead, Olga; Sosman, James; Kashif, Iqbal; Flanigan , Timothy P .; the Project START Study Group Unprotected Sex With Multiple Partners: Implications for HIV Prevention Among Young Men With a History of Incarceration. Sexually Transmitted Diseases. 33(3):175-180, March 2006

Dhawan D, Mayer KH . Microbicides to Prevent HIV Transmission: Overcoming Obstacles to Chemical Barrier Protection (Perspective). Journal of Infectious Diseases 193:36-44, 2006.

Mayer KH , Maslankowski LA, Gai F, El-Sadr WM, Justman J, Kwiecien A, Masse B, Eshleman SH, Hendrix C, Morrow K , Rooney JF, Soto-Torres L and the HPTN 050 Protocol Team. Safety and Tolerability of Tenofovir Vaginal Gel in Abstinent and Sexually Active HIV-uninfected and Infected Women. AIDS 20:543-551, 2006.

Koblin BA, Hasnuk MJ, Colfax G, Huang Y, Madison M, Mayer K , Barresi PJ, Coates TJ, Chesney MA, Buckbinder S. Risk factors for HIV infection among men who have sex with men. AIDS 20:731-739, 2006.

Mayer, KH . Speed bumps: concerns about methamphetamine and other club drug use among men who have sex with men. The Brown University Digest of Addiction Theory and Application 25(3):8, 2006.

Mayer KH , Chaguturu S (editorial commentary). Penalizing Success: Is Comprehensive HIV Care Sustainable? Clinical Infectious Diseases 42:1011-1013.

Mayer KH , HIV Prevention: Diverse Populations, Diverse Challenges, Advanced Studies in Medicine , Johns Hopkins University School of Medicine, 3(3A):S113-122, 2006.

Buck JM, BA, Morrow KM , Margolis A, Eldridge G, Sosman J, MacGowan R, Binson D, Kacanek D, Flanigan TP , and The Project START Study Group. Hepatitis B vaccination in prison: The perspectives of formerly incarcerated men. J Correct Hlth Care 12(1):12-23, Jan 2006.

Pugatch D , Anderson BJ, O'Connell JV, Elson LC, Stein MD . HIV and HCV testing for young drug users in Rhode Island. Journal of Adolescent Health .38(3):302-304, 2006.

Mimiaga MJ, Safren SA , Benet DJ, Manseau MW, DeSousa N, Mayer KH . MSM in HIV-Prevention Trials are Sexual Partners with Each Other: An Ancillary Study to the EXPLORE Study. AIDS and Behavior 10(1):27-34, 2006.

Simmons, Emma M.D., M.P.H .; Roberts, Mary M.S.; Ma, Mindy Ph.D; Beckwith , Curt M.D .; Carpenter, Charles M.D. ; Flanigan, Timothy M.D .; Routine Testing for HIV in the United States: The Intersection Between Recommendations and Practice . AIDS Patient Care & Stds. 20(2):79-83, February 2006.

Rogers, K. A., Rogers, A. B., Leav, B. A., Sanchez, A., Vannier, E., Uematsu, S., Akira, S., Golenbock, D. Ward, H. D. MyD88-dependent pathways mediate resistance to Cryptosporidium parvum infection in mice . Infection and Immunity 74:549-56 2006.

Cohen, S., Dalle, F., Gallay, A. Di Palma, M., Bonnin, A. and Ward, H. D . Identification of Cpgp40/15 Ib as the predominant allele in isolates of Cryptosporidium spp. from a waterborne outbreak of gastroenteritis in South Burgundy, France. Journal of Clinical Microbiology 44:589-91 2006.

Muthusamy D., Rao S. S., Ramani S., Monica B., Banerjee I., Abraham O. C., Mathai D. C, Primrose B., Muliyil J., Wanke C. A., Ward H. D . , and Kang G. Multi-locus genotyping of Cryptosporidium spp. isolates from HIV-infected individuals in South India. Journal of Clinical Microbiology 44: 632-34 2006.

Wilson , Ira ; Jacobson, Denise , Regarding: "Antidepressant Treatment Improves Adherence to Antiretrov ira l Therapy Among Depressed HIV-Infected Patients". JAIDS Journal of Acquired Immune Deficiency Syndromes. 41(2):254-255, February 1, 2006.

Marsden PV, Landon BE, Wilson IB , McInnes K, Hirschorn LR , Ding L, Cleary PD. The reliability of survey assessments of characteristics of medical clinics. Health Serv Res 2006 Feb;41(1):265-83.

Vallabhaneni S, Kumarasamy N, Wing EJ , Flanigan TP . A Diagnostic Dilemma in a Patient Receiving Antiretroviral and Antituberculosis Therapy. The AIDS Reader 15(2):72-75, 2006.

2005

Beckwith CG, Flanigan TP, del Rio C, Simmons E, Wing EJ, Carpenter CCJ , Bartlett JG. It's time to implement routine, not risk-based, HIV testing. Clinical Infectious Diseases 2005; 40: 1037-1040.

Brown, L ., Houck, C., Hadley, W., and Lescano, C .: Self-cutting and sexual risk among adolescents in intensive psychiatric treatment . Psychiatric Services , 56(2), 216-219, 2005.

Crosby, R.A., DiClemente, R.J., Wingood, G.M., Salazar, L.F., Rose, E., Levine, D., Brown, L ., Lescano, C., Pugatch, D., Flanigan, T ., Fernandez, I., Schlenger, W., & Silver, B.: Condom failure among adolescents: Implications for STD prevention, Journal of Adolescent Health , 36 (6), 534-536, 2005.

Crosby RA, DiClemente RJ, Wingood GM, Salaza LF, Rose E, Levine D, Brown L , Lescano C, Pugatch D, Flanigan T , Fernandez I, Schelnger W, Silver BJ. Correlates of Condom Failure Among Adolescent Males. Preventive Medicine , 41:873-6, 2005.

Lourie, K., Pao, M., Brown, L ., and Hunter, H: Psychiatric issues in pediatric HIV/AIDS. In HIV and Psychiatry: A Training and Resource Manual . (K. Citron, M. Brouillette, & A. Beckett, Eds.). Cambridge University Press, 11: 181-195, 2005.

McMurry, J, Sbai H, Gennaro ML, Carter EJ , Martin W, De Groot AS . Analyzing Mycobacterium tuberculosis proteomes for candidate vaccine epitopes. Tuberculosis (Edinb). 2005; 85(1-2):95-105.

Coakley , Eoin ; Petropoulos, Christos J; Whitcomb, Jeannette M Assessing chemokine co-receptor usage in HIV. Current Opinion in Infectious Diseases. 18(1):9-15, February 2005.

Viscidi RP, Snyder B, Cu-Uvin S , Hogan J , Clayman B, Klein S, Sobel J, Shah KV. Human Papillomavirus (HPV) Capsid Antibody Response to Natural Infection and Risk of Subsequent HPV Infection in Human Immunodeficiency Virus-Positive and -Negative Women. Cancer Epid, Biomarkers, Prevention 14(1):283-8, Jan. 2005.

Cu-Uvin S . Effect of the menstrual cycle on virological parameters. J Acquir immune Def Syndr 38 : S33-34, March 2005.

Morris AB, Dobles AR, Cu-Uvin S , Zorilla C, Anderson J, Harwell J , Keller J, Garb J. Protease inhibitor use in 233 pregnancies. J Acquir Immune Defic Syndr 40(1) : 30-33, Sept. 2005.

De Groot , AS , S. Cu Uvin . HIV Infection in incarcerated Women . IDCR (formerly HEPP Report), May 2005.

De Groot AS , Marcon L , Bishop EA, Rivera D, Kutzler M, Weiner DB, Martin W. HIV vaccine development by computer assisted design: the GAIA vaccine. Vaccine . 2005 Mar 18;23 [7-18):2136-48.

De Groot AS , McMurry J, Marcon L , Franco J, Rivera D, Kutzler M, Weiner D, Martin B. Developing an epitope-driven tuberculosis (TB) vaccine. Vaccine. 2005 Mar 18;23(17-18):2121-31.

De Groot AS , P.M. Knopf, Shawn Foti, Bill Martin . De-immunization of therapeutic proteins by T cell epitope modification. Mire-Sluis, A. Ed. State of the Art Analytical Methods for the Characterization of Biological Products and Assessment of Comparabilitiy. Dev. Biol. Basel, Karger, 2005. vol 122. pp 137-160.

Otero M, Calarota SA, Dai A, De Groot AS , Boyer JD, Weiner DB. Efficacy of novel plasmid DNA encoding vaccinia antigens in improving current smallpox vaccination strategy. Vaccine. 2005 Aug 30.

Dong KR and Hendricks KM : The Role of Nutrition in Fat Deposition and Fat Atrophy in Patients with HIV . Nutrition in Clinical Care , 8(1):31-36, 2005.

Flanigan T , Campbell T, Harwell J , Kumarasamy N. The Extraordinary Hope of Antiretroviral Therapy in South Africa (Even in Patients with TB or Kaposi's Sarcoma!). Editorial. J Infect Dis 191:321-23, 2005.

Kumarasamy N, Vallabhaneni S, Flanigan T , Balakrishnan B, Ceclia A, Carpenter CCJ , Solomon S , Mayer KH . Rapid viral load suppression following generic HAART in Southern Indian HIV-infected patients. AIDS 19(6):625-27, 2005.

Sosman JM, MacGowan RJ, Margolis AD, Eldridge G, Flanigan T , Vardaman J, Fitzgerald C, Kacanek D, Binson D, Seal D, Gaydos CA, and the Project START Study Group. Screening for sexually transmitted diseases and hepatitis in 18-29-year-old men recently released from prison: feasibility and acceptability. Intl J STD & AIDS . 16(2):117-122, 2005.

Flanigan TP , Taylor LE, Mitty JA . Use of Community-Based, Directly Observed Therapy for HIV Infection: Lessons Learned for Treatment of Hepatitis C Virus Infection. CID 40 (Suppl 5):S346-348, 2005.

Kumarasamy N, Vallabhaneni S, Flanigan TP , Mayer KH , Solomon S. Clinical profile of HIV in India. Indian J Med Res 121(April):377-394, 2005.

Kumarasamy, N, Solomon S, Chaguturu SK, Cecelia AJ, Vallabhaneni S, Flanigan TP , Mayer KH . The Changing Natural History of HIV Disease: Before and After the Introduction of Generic Antiretroviral Therapy in Southern India. CID 41:1525-28, 2005.

Kumarasamy, N, Vallabhaneni S, , Cecelia AJ, Chaguturu SK, Yepthomi T, Balakrishnan P, Saghayam S, Flanigan TP , Carpenter CCJ , Solomon S, Mayer KH . Reasons for Modification of Generic Highly Active Antiretroviral Therapeutic Regimens Among Patients in Southern India. J Acquir Immune Defic Syndr 41(1):53-58, 2005.

Forrester, J.E., Tucker, K.L., and Gorbach, S.L .: The Effect of Drug Abuse on Body Mass Index in Hispanics with and without HIV Infection. Public Health Nutrition , 8(1):61-68, February, 2005.

Goldin BR , Li W-J, Mansfield K, Woods MN , Wanke CA , Freeman LG, Shevitz AH, Gualtieri L, Bussell S, Gorbach SL : The Effect of Micronutrient Supplementation on Disease Progression and Death in SIV-Infected Juvenile Male Rhesus Macaques . Journal of Infectious Diseases , 192:311-318, 2005.

Rogers MC, Gopalakrishnan G , Kumarasamy N, Carpenter CCJ, Mayer KH , Solomon S. HIV in couples in South India; implications for prevention . Intl J of STD & AIDS 16:442-445, 2005.

Obaro SK, Losikoff P, Harwell J , Pugatch D . Failure of serial human immunodeficiency virus type 1 DNA polymerase chain reactions to identify human immunodeficiency virus type 1 Clade A/G. Pediatric Infectious Disease Journal , 24:183-184, 2005.

Bun Navy K, Prem Prey S, Lynen L, Sovanna P, Bell J, Harwell JI . The first reported case of disseminated histoplasmosis in Cambodia, complicated by multiple opportunistic infections. Southeast Asian J Trop Med Public Health 36:1-3, 2005.

Fleishman, John A.; Gebo, Kelly A., MPH; Reilly, Erin D.; Conviser, Richard ; Mathews, W Christopher; Korthuis, P Todd ; Hellinger, James ; Rutstein, Richard MD; Keiser, Philip; Rubin, Haya; Moore, Richard D.; for the HIV Research Network Hospital and Outpatient Health Services Utilization Among HIV-Infected Adults in Care 2000-2002. Medical Care. The Delivery of Health Care Services to Persons with HIV Disease New Empirical Studies. 43(9) suppl:III-40-III-52, September 2005.

Gebo, Kelly A.; Fleishman, John A. Conviser, Richard; Reilly, Erin D.; Korthuis, P. Todd; Moore, Richard D; Hellinger, James ; Keiser, Philip MD; Rubin, Haya R.; Crane, Lawrence; Hellinger, Fred J.; Mathews, W. Christopher; for the HIV Research Network Racial and Gender Disparities in Receipt of Highly Active Antiretroviral Therapy Persist in a Multistate Sample of HIV Patients in 2001. JAIDS Journal of Acquired Immune Deficiency Syndromes. 38(1):96-103, January 1, 2005.

Ludy M-J, Hendricks KM , Houser R, Chetchotis AKD, Mootsikapun P, Anunnatsiri S, Price E, and Wanke CA . Body Composition in Adults Infected with Human Immunodeficiency Virus in Khon Kaen, Thailand. American Journal of Tropical Medicine and Hygiene , 73(4):815-819, 2005.

Hendricks KM , Tang AM , Spiegelman D, Skinner S, and Woods MN : Dietary Intake in Human Immunodeficiency Virus-Infected Adults: A Comparison of Dietary Assessment Methods. Journal of the American Dietetic Association , 105:532-540, 2005.

Hendricks KM , Laferriere R, Houser RF, and Knox TA : Dietary Intake in HIV-Positive Persons with and without Malabsorption. Nutrition in Clinical Care , 8(1):37-43, 2005.

Jacobson DL , Spiegelman D, Duggan C, Weinberg GA, Bechard L, Furuta L, Nicchitta J, Gorbach SL , Miller TL: Predictors of Bone Mineral Density of HIV-1 Infected Children. Journal of Pediatric Gastroenterology and Nutrition , 41:339-346, 2005.

Jacobson DL , Knox TA , Spiegelman D, Skinner S, Gorbach SL, and Wanke CA : Prevalence, Evolution, and Risk Factors for Fat Atrophy and Fat Deposition in a Cohort of HIV-Infected Men and Women. Clinical Infectious Diseases , 40:1837-1845, 2005.

Joffe TH , Welle S, Roubenoff R, Gorbach SL , Weinberg GA, Duggan C, Furuta L, Nicchitta J, Lipinczyk TM, Miller TL: A Bioelectrical Impedance Analysis Equation for Predicting Total Body Water and Fat Free Mass in Children with Human Immunodeficiency Virus-1 in the pre-HAART and HAART Eras. International Journal of Body Composition Research , 3(1):15-24, 2005.

Jones CY , Wilson IB, Greenberg AS, Shevitz AH, Knox TA, Gorbach SL , Spiegelman D, Jacobson DL, Wanke CA: Insulin Resistance in HIV-Infected Men and Women in the Nutrition for Healthy Living Cohort . Journal of Acquired Immune Deficiency Syndrome , 40(2): 202-211, 2005.

Balakrishnan P, Kumarasamy N, Kantor R , Solomon S, Vidya S, Mayer KH , Newstein M , Thyagarajan SP, Katzenstein D, Ramratnam B . Related Articles, Links. HIV type 1 genotypic variation in an antiretroviral treatment-naive population in southern India. AIDS Res Hum Retroviruses 21(4):301-5, Apr. 2005.

Kwara A . Flanigan TP, Carter EJ . Highly active antiretroviral therapy (HAART) in adults with tuberculosis: current status. Review article. Int J Tuberc Lung Dis 9(3):248-257, 2005.

Kohli R , Lo Y, Howard AA, et al. Mortality in an Urban Cohort of HIV-Infected and At-Risk Drug Users in the Era of Highly Active Antiretroviral Therapy. Clinical Infectious Diseases , 41:864-872, 2005.

Lanzillotti JS and Tang AM : Micronutrients and HIV Disease: A Review Pre- and Post-HAART. Nutrition in Clinical Care , 8(1):16-23, 2005.

Leav, B . A., Yoshida, M., Rogers, K. A, Cohen, S., Godiwala, N., Blumberg, R. S., and Ward, H. D . An Early Intestinal Mucosal Source of Interferon Gamma is Associated with Resistance to and Control of Cryptosporidium parvum Infection in Mice. Infection and Immunity 73:8425-8 2005.

Crosby, R. A., DiClemente, R. J., Wingood, G. M., Lescano, C. M ., Harringon, K., & Davies, S. L. (2005). Self-esteem and theoretical mediators of safer sex among African American female adolescents: Implications for sexual risk reduction interventions. Health Education and Behavior , 32 (3), 413-427.

Houck CD, Lescano CM , Brown LK , Tolou-Shams M, Thompson J, DiClemente R, Isabel Fernandes M, Pugatch D , Schlenger WE, Silver BJ. "Islands of Risk": Subgroups of Adolescents at Risk for HIV. J Pediatr Psychol , Aug 29, 2005.

Salazar, L.F., Crosby, R.A., DiClemente, R.J., Wingood, G.M., Lescano, C.M ., Brown, L.K., Harrington, K., and Davies, S.: Self-esteem and theoretical mediators of safer sex among African American female adolescents: Implications for sexual risk reduction interventions. Health Education and Behavior , 32 (3), 413-427, 2005.

Akileswaran C, Lurie MN, Flanigan TP , Mayer KH . Lessons Learned from Use of Highly Active Antiretroviral Therapy in Africa. Clinical Infectious Diseases 41:376-85, 2005.

Lurie MN , Akileswaran C, Mayer KH . Opportunities for Preventing HIV in Treatment Settings in Developing Countries. Lancet 5(2):66-68, 2005.

Zuma K, Lurie MN , Williams BG, Mwamburi DM , Garnett GP, Sturm AW. Risk Factors of Sexually Transmitted Infections among Migrant and Non-Migrant Sexual Partnerships from Rural South Africa. Epidemiol Infections , 133(3):421-428, June, 2005.

Macalino GE , Vlahov D, Dickinson BP, Schwartzapfel B, Rich JD . Opportunities to address the hepatitis C epidemic in the correctional setting. CID (Suppl 5) 40:S367-72, 2005.

Macalino GE , Vlahov D, Dickinson BP, Schwartzapfel B, Rich JD . Community Incidence of hepatitis B and C among reincarcerated women. Clin Infect Dis 41:998-1002, 2005.

Macalino GE , Dhawan D. Rich JD . A missed opportunity: hepatitis C screening of prisoners. Am J Public Health 95(10):1739-40, 2005.

Vallabhaneni S, Macalino GE , Reinert SE, Schwartzapfel B, Wolf FA, Rich JD . Prisoners favour hepatitis C testing and treatment. Epidemiol Infect 134(2):243-248l, 2005.

McKenzie M, Macalino G , McClung C, Shield DC, Rich JD . Opiate replacement therapy at time of release from incarceration: project MOD, a pilot program. J Opiate Manage 1(3):147-51, 2005.

Mangili A , Gendreau MA: Transmission of Infectious Disease during Commercial Air Travel. Lancet , 365:989-996, 2005.

Balakrishnan PJ, Solomon S, Kumarasamy N, Mayer KH . Low-cost Monitoring of HIV Infected Individuals on Highly Active Antiretroviral Therapy (HAART) in Developing Countries. Indian J Med Res 121:345-355, 2005.

Bartholow BN, Buchbinder S, Celum C, Goli V, Koblin B, Mara M, Marmor M, Novak RM, Mayer K , Creticos C, Orozco-Cronin P, Popovic V, Mastro TD, for the VISION/VAX004 Study Team. HIV Sexual Risk Behavior Over 36 Months of Follow-Up in the World's First HIV Vaccine Efficacy Trial. Journal of Acquired Immune Deficiency Syndromes 39(1):90-101, 2005.

Buchbinder SP, Vittinghoff E, Heagerty P, Celum CL, Seage GR, Judson FN, McKirnan D, Mayer KH , Koblin BA. Sexual Risk, Nitrite Inhalant Use, and Lack of Circumcision Associated with HIV Seroconversion in Men Who Have Sex With Men in the United States. Journal of Acquired Immune Deficiency Syndroms 39(1):82-89, 2005.

Cavacini LA, Duval M, Patil A, Wood C, Mayer KH , Ruprecht RM, Posner MR. Dichotomy in cross-clade reactivity and neutralization by HIV-1 sera: implications for active and passive immunotherapy. Journal of Medical Virology 76:146-152, 2005.

Chin-Hong PV, Vittinghoff E, Cranston RD, Browne L, Buchbinder S, Colfax G, DaCosta M, Darragh T, Benet DJ, Judson F, Koblin B, Mayer KH , Palefsky JM. Age-Related Prevalence of Anal Cancer Precursors in Homosexual Men: The EXPLORE Study. Journal of the National Cancer Institute 97(12):896-905, 2005.

Flynn NM, Forthal DN, Harro CD, Judson FN, Mayer KH , Para MF, Gilbert PB, Hudgens MG, Metch BJ, Self SG, Berman PW, Francis DP, Gurwith M, Heyward WL, Jobes DV, Peterson ML, Popovic V, Sinangil FM. Placebo-controlled Trial of a Recombinant Glycoprotein 120 Vaccine to Prevent HIV Infection . Journal of Infectious Diseases 191:654-665, 2005.

Ghanem KG, Shah N, Klein RS, Mayer KH , Sobel JD, Warren DL, Jamieson DJ, Duerr AC, Rompalo AM, for the HIV Epidemiology Research Study (HERS) Group. The Influence of Sex Hormones, HIV Status, and Concomitant Sexually Transmitted Infection on Cervicovaginal Inflammation . Journal of Infectious Diseases 191(3):358-366, 2005.

Joshi S, Solomon S, Mayer K , Mehendale S. Preparing for Efficacy Trials of Vaginal Microbicides in Indian Women. Indian Journal of Medical Research 121:502-509, 2005.

Kumarasamy N, Solomon S, Chaguturu SK, Cecelia AJ, Vallaghaneni, S, Flanigan TP, Mayer KH . The Changing Natural History of HIV Disease: Before and after the Introduction of Generic Antiretroviral Therapy in Southern India. Clinical Infectious Diseases 41(10):1525-8, 2005.

Kumarasamy K, Vallabhaneni S, Cecelia AJ, Mayer KH , Solomon S, Carpenter CCJ , Flanigan TP . Safe Discontinuation of Primary Pneumocystis Prophylaxis in Southern Indian HIV-Infected Patients on Highly Active Antiretroviral Therapy (letter to the Editor). Journal of Acquired Immune Deficiency Syndromes 40(3):377-378, 2005.

Quach L, Mayer K , McGarvey ST , Lurie MN , Do P. Knowledge, Attitudes, and Practices Among Physicians on HIV/AIDS in Quang Ninh, Vietnam. AIDS Patient Care and STDs 19(5):335-346, 2005.

Ratelle S, Mayer K , Goldhammer H, Mimiaga M, Coury-Doniger P.  Prevention and Management of Sexually Transmitted Diseases in Men who Have Sex with men: A Toolkit for Clinicians (1st ed.)   Boston, MA: Massachusetts Department of Public Health; 2005.

Sharghi N, Bosch RJ, Mayer KH Essex M, Seage GR. The Development and Utility of a Clinical Algorithm to Predict Early HIV-1 Infection. Journal of Acquired Immune Deficiency Syndromes 40(4):472-478, 2005.

Sivaram S, Srikrishnan AK, Kailapuri, Murgavel G, Mayer KH , Anand S, Celentano DD, Solomon S. An Approach to Addressing Ethical Issues in a Community-based Risk Assessment for HIV: A Case from Chennai, India. Journal of Health Population and Nutrition , 23(2):165-76, 2005.

Syed IH, Balakrishnan P, Solomon SS, Murugavel KG, Kumarasamy N, Vidya S, Martin SP, Thyagarajan SP, Mayer KH , Solomon S. HIV-1 Western Blot Assay: What Determines an Indeterminate Status? Indian Journal of Medical Sciences 59(10):443-450, 2005.

Uma S, Balakrishnan P, Murugavel KG, Srikrishnan AK, Kumarasamy N, Cecelia JAS, Mayer KH , Celentano D, Thyagarajan SP, Solomon S. Bacterial Vaginosis in Female Sex Workers in Chennai, India (letter). Sexual Health 2(4):261-262, 2005.

Xu C, Politch JA, Mayer KN , Anderson DJ. Human Immunodeficiency Virus type-1 episomal cDNA in semen. AIDS Research and Therapy 2:9, 2005.

Blackard JT, Smeaton L, Hiasa Y, Horiike N. Onji J, Jamieson DJ, Rodriguez I, Mayer KH , Chung RT. Detection of Hepatitis C virus (HCV) in serum and peripheral-blood mononuclear cells from HCV-monoinfected and HIV/HCV-coinfected persons. Journal of Infectious Diseases 192(2):258-65, 2005.

McDermott AY , Shevitz AH , Terrin N, Skinner S, Wanke CA , Tchetgen E, and Gorbach SL : CD4+ Cell Count, Viral Load, and HAART Use are Independent Predictors of Body Composition Alterations in HIV-Infected Adults: A Longitudinal Study. Clinical Infectious Diseases , 41(11):1662-1670, 2005.

Merchant RC , Fuerch J, Becker BM, and Mayer KH . Comparison of the epidemiology of human bites evaluated at three US pediatric emergency departments. Pediatric Emergency Care 21(12):833-38, 2005.

Merchant RC , Mayer K . Perspectives on New Recommendations for Nonoccupational HIV Postexposure Prophylaxis. Journal of the American Medical Association 293(10):2407-2409, 2005.

Mitty JA , Macalino GE , Bazerman LB, Loewenthal HG, Hogan JW , MacLeod CJ, Flanigan TP . The use of community-based modified directly observed therapy for the treatment of HIV-infected persons, J Acquir Immune Defic Syndr , 2005; 39(5):545-50.

The A, Mitty JA , Loewenthal H, Bazerman LB, Flanigan T . The Potential Use of Directly Observed Therapy (DOT) for the Treatment of HIV+ Individuals Being Released from Prison. Journal of Correctional Health 2005 ; Vol. 11, Issue 2:191-198.

Mwamburi DM , Wilson IB, Jacobson DL , Spiegelman D, Gorbach SL , Knox TA , Wanke CA : Understanding the Role of HIV Load in Determining Weight Change in the Era of Highly Active Antiretroviral Therapy. Clinical Infectious Diseases , 40:167-173, 2005.

Mwamburi DM , Ghosh M, Fauntleroy J, Gorbach SL, Wanke CA : Predicting CD4 Count Using Total Lymphocyte Count (TLC): A Sustainable Tool for Clinical Decision During HAART Use. American Journal of Tropical Medicine and Hygiene , 73(1):58-62, 2005.

Mwamburi DM , Dladla N, Qwana E, Lurie MN . Factors associated with wanting to know HIV results in South Africa. AIDS Patient Care STDS . 2005 Aug;19(8):518-25.

Rostasy, K; Monti, L; Lipton, S A; Hedreen, J C; Gonzalez, R G; Navia , B A , HIV leucoencephalopathy and TNF[alpha] expression in neurones. Journal of Neurology, Neurosurgery & Psychiatry. 76(7):960-964, July 2005.

Newstein M . Losikoff P. Caliendo A. Ingersoll J. Kurpewski J. Hanley D. Cerezo J. Ramratnam B. Cu-Uvin S . Prevalence and persistence of nonnucleoside reverse transcriptase inhibitor mutations in the female genital tract. Journal of Acquir Immune Defic Syndr . 38(3):364-6, Mar. 1, 2005.

Paul R , Flanigan TP, Tashima K , Cohen R, Lawrence J, Alt E, Tate D , Ritchie C, Hinkin C. Apathy Correlates With Cognitive Function But Not CD4 Status in Patients with Human Immunodeficiency Virus. J Neuropsych & Clin Neurosci . 17(1):114-118, 2005.

Paul, RH , Brickman, AM, Navia, B . Hinkin, C., Malloy, PF, Jefferson AL, Cohen, RA , Tate, DF , Flanigan, TP, Apathy is associated with volume of the nucleus accumbens in patients infected with HIV . Neuropsychiatry and Clinical Neurosciences , 17(2):167-171, 2005.

Pusch, O., Boden, D ., Silbermann, R., Lee, F., Tucker, L., Ramratnam, B . (2004) Efficient gene transfer of HIV-1 specific short hairpin RNA into human lymphocytic cells using recombinant adeno-associated virus (rAAV) vectors. Molecular Therapy 9 : 396-402 .

Pusch, O., Boden, D ., Silbermann, R., Lee, F., Tucker, L., Ramratnam, B. (2004). Enhanced gene silencing of HIV-1 specific siRNA using microRNA designed hairpins. Nucleic Acids Research 32: 1154-58 .

Pusch, O., Boden, D., Hannify, S., Lee, F., Tucker, L., Wells, J.M., Boyd, M.R. Ramratnam, B ., (2005) Engineering Lactic Acid Bacteria to secrete the virucide cyanovirin. J Acquir Immune Defic Syndr.

Rich JD , Boutwell AE, Shield DC, Key RG, McKenzie M, Clarke JG, Friedmann PD . Attitudes and practices regarding the use of methadone in US state and federal prisons. J Urban Health 82(3):411-19, 2005.

Rich JD , McKenzie M, Shield DC, Wolf FA, Key RG, Poshkus M , Clarke J. Linkage with methadone treatment upon release from incarceration: a promising opportunity . J Add Diseases 24(3):49-59, 2005.

Edlin BR, Kresina TF, Raymond DB, Carden MR, Gourevitch MN, Rich JD , Cheever LW, Cargill VA. Overcoming barriers to prevention, care, and treatment of hepatitis C in illicit drug users. Clin Infect Dis 40(Suppl 5):S276-85, 2005.

Spaete JP, Rich JD . HIV prevention and care in incarcerated populations. Focus 20(8):1-8, 2005.

Phipps, M.G., Rosengard, C ., Weitzen, S., & Boardman, L. A. (2005). Low rates of voluntary paternity establishment for infants born to unmarried adolescent mothers. Journal of Reproductive Medicine, 50(1), 764-770.

Rosengard, C . Adler, N. E. Gurvey, J. E., & Ellen, J. M. (2005) Adolescent partner type experience: Psychosocial and behavioral differences. Perspectives on Sexual & Reproductive Health, 37(3), 141-147.

Rosengard, C ., Phipps, M.G., Adler, N. E., & Ellen, J. M. (2005). Psychosocial correlates of adolescent males' pregnancy intention. Pediatrics, 116, e414 - e419. ( www.pediatrics.org/cgi/doi/10.1542/peds.2005-0130 ).

Rosengard, C ., Clarke, J. G., DaSilva, K., Hebert, M. R., Rose, J., & Stein, M. D. (2005). Correlates of partner-specific condom intentions among incarcerated women in Rhode Island. Perspectives on Sexual & Reproductive Health, 37(1), 32-38.

Kumarasamy N, Safren SA , Raminani S, Pickard R, James R, Sri Krishnan AK, Solomon S, Mayer KH . Barriers and Facilitators to Antiretroviral Medication Adherence among Patients with HIV in Chennai, India: A Qualitative Study. AIDS Patient Care and STDs 19(8):526-537, 2005.

Berg MB, Safren SA , Mimiaga MJ, Grasso C, Boswell S, Mayer KH . Nonadherence to Medical Appointments is associated with Increased Plasma HIV RNA and Decreased CD4 Cell Counts in a Community-based HIV Primary Care Clinic. AIDS Care 17(7):902-907, 2005.

Safren SA , Kumarasamy N, James R, Raminani S, Solomon S, Mayer KH . ART Adherence, Demographic Variables, and CD4 Outcomes Among HIV-positive Patients on Antiretroviral Therapy in Chennai, India. AIDS Care 17(7):853-862, 2005.

Shevitz AH , Wilson IB , McDermott AY, Spiegelman D, Skinner SC, Antonsson K, Layne JE, Beaston-Blaakman A, Shepard DS, and Gorbach SL : A Comparison of the Clinical and Cost-Effectiveness of 3 Intervention Strategies for AIDS Wasting. Journal of AIDS , 38(4):399-406, 2005.

Shevitz AH , Wilson, IB , McDermott AY, Spiegelman D, Skinner SC, Antonsson K, Layne JE, Beaston-Blaakman A, Shepard DS, and Gorbach SL : Response to Hatoum and Walton. Journal of AIDS , 40(2):237-238, 2005.

Simmons EM , Rogers ML, Frierson GM, Beckwith CG, Flanigan TP . Racial/Ethnic Attitudes towards HIV Testing in the Primary Care Setting . J Natl Med Assoc 97(1):46-52, 2005.

Simmons EM and Flanigan TP . Distrust of the Medical System Persists: Implications for Routine HIV Testing. Medical Health Rhode Island . 2005; 88 (6): 182-185.

Smith J, Simmons E , Mayer KH . HIV/AIDS and the Black Church: What are the Barriers to Prevention Services? Journal of the National Medical Association 97(12), 2005.

Hayaki J, Anderson BJ, Stein MD . Perceptions of health risk susceptibility among methadone maintained smokers. J. Addictive Dis 2005;24:73-84.

Hayaki, J, Stein MD , Lassor JA, Herman DS, Anderson BJ. Adversity among drug users: relationship to impulsivity. Drug Alc Depend 2005;78:65-71.

Shadel WG, Stein MD , Anderson BJ, Herman DS, Bishop S, Lassor JA, Weinstock M, Anthony JL, Niaura R. Correlates of motivation to quit smoking in methadone-maintained smokers enrolled in a smoking cessation trial. Addictive Behav 2005;30:295-300.

Stein MD , Anderson BJ, Solomon DA, Herman DS, Ramsey SE, Brown RA, Miller IW. Reductions in HIV risk behaviors among depressed drug injectors . Am J Drug Alc Abuse 2005; 31:417-432.

Dancheck B, Tang AM , Thomas AM, Smit E, Izzo J, Vlahov D, Semba RD: Injection Drug Use is an Independent Risk Factor for Iron Deficiency and Iron Deficiency Anemia among Human Immunodeficiency Virus Seropositive and Seronegative Women. JAIDS , 40(2):198-201, 2005.

Tang AM , Lanzillotti JS, Hendricks KM , Gerrior J, Ghosh M, Woods MN, Wanke CA : Micronutrients: Current issues for HIV care providers. AIDS , 19(9):847-861, 2005.

Smit E, Semba RD, Pilibosian E, Vlahov D, Tun W, Purvis L, Tang AM : Body habitus in a Cohort of HIV-Seropositive and HIV-Seronegative Injection Drug Users. AIDS Patient Care Standards . 19(1):19-30, 2005.

Tang AM , Jacobson DL , Spiegelman D, Knox TA , and Wanke CA : Increasing Risk of 5% or Greater Unintentional Weight Loss in a Cohort of HIV Infected Patients, 1995-2003. JAIDS , 40:70-76, 2005.

Dancheck B, Tang AM , Thomas AM, Smit E, Izzo J, Vlahov D, Semba RD: Injection Drug Use is an Independent Risk Factor for Iron Deficiency and Iron Deficiency Anemia among Human Immunodeficiency Virus Seropositive and Seronegative Women. JAIDS , 40(2):198-201, 2005.

Taylor LE , Gholam PM, Schwartzapfel B, Rich JD . Hepatitis C Treatment in an HIV/HCV Coinfected Patient with Drug Addiction and Psychiatric Illness: A Case Report. The AIDS Reader Nov; 5(11):629-31, 2005.

Taylor LE . Delivering care to injection drug users coinfected with HIV and Hepatitis C virus. CI D 15:40 Suppl 5:S346-8, 2005.

Wanke CA . Nutrition and HIV in the International Setting. Nutrition in Clinical Care , 8(1):44-48, 2005.

Wanke CA , Gerrior J, Hendricks KM , McNamara JR, Schaefer E: Alterations in Lipid Profile in HIV-Infected Patients Treated with Protease-Inhibited Therapy are not Influenced by Diet. Nutrition in Clinical Practice , 20(6):668-673, 2005.

Anunnatsiri S, Chetchotisakd P, Wanke CA : Factors Associated with Treatment Outcomes in Pulmonary Tuberculosis in Northeastern Thailand. Southeast Asian J Trop Med Public Health , 36(2):324-330, 2005.

Kang G, Samuel R, Vijayakumar TS, Selvi S, Sridharan G, Brown D, Wanke CA : Community Prevalence of Antibodies to HIV in Rural and Urban Vellore, Tamil Nadu . Natl Med J India , 18(1):15-17, 2005.

Burgess E, Wanke CA : Use of Recombinant Human Growth Hormone in HIV-Associated Lipodystrophy. Current Opinion in Infectious Diseases , 18(1):17-24, 2005.

Ding L, Landon BE, Wilson IB , Wong MD , Shapiro MF, Cleary PD. Predictors and consequences of negative physician attitudes toward HIV drug users. Arch Int Med 2005;165:618-23.

Jones,CY, Wilson,I , Greenberg,AS, Shevitz,A , Knox,TA, Gorbach,SL , Spiegelman,D, Jacobson DL , Wanke, C . Insulin resistance in HIV-infected men and women in the Nutrition for Healthy Living Cohort. J AIDS 2005:40; 202-211.

Landon BE, Wilson IB , McInnes K, Landrum MB, Hirschorn LR, Marsden PV, Cleary PD. Physician specialization and the quality of care for HIV infection. Arch Int Med 2005; 165(10):1133-9.

Wilson IB , Rogers WH, Chang H, Safran DG. Cost-related skipping of medications and other treatments among Medicare beneficiaries between 1998 and 2000. Results of a national study. J Gen Intern Med 2005;20(8):715-20

Wilson IB , Landon BE, Hirschorn LR , Mcinnes K, Ding L, Marsden PV, Cleary PD. Quality of care provided by nurse practitioners, physician assistants, and physicians. Ann Intern Med 2005;143:729-736

Wilson IB , Landon BE, Ding L, Zaslavsky AM, Shapiro MF, Bozzette SA, Cleary PD. A national study of the relationship of care site HIV specialization to early adoption of highly active antiretroviral therapy. Med Care . 2005;43(1):12-20.

Braithwaite RS, Justice AC, Chang CCH, Fusco JS, Raffanti SR, Wong JB , Roberts MS. Estimating the proportion of patients infected with HIV who will die of comorbid diseases. American Journal of Medicine 2005;118(8):890-8.

Siebert U, Wasem J, Rossol S, Sroczynski G, Aidelsburger P, Ravens-Sieberer U, Kurth BM, Manns MP, McHutchison JG, Wong JB . Antiviral treatment initiation costs in chronic hepatitis C. Gut 2005;54:172-3.

Siebert U, Sroczynski G, Wasem J, Greiner W, Ravens-Sieberer U, Aidelsburger P, Kurth BM, Bullinger M, Graf von der Schulenburg JM, Wong JB , Rossol S. Using competence network collaboration and decision-analytic modeling to assess the cost-effectiveness of interferon alpha-2b plus ribavirin as initial treatment of chronic hepatitis C in Germany. European Journal of Health Economics 2005;6(2):112-23.

Woods MN : Role of n-3 Fatty Acids in Prevention of Disease Complications in Patients with HIV. Nutrition in Clinical Care, 8(1):24-30, 2005.

Woods MN : Omege-3 Fatty Acids: What? Why? And How?. Nutrition in Clinical Care, 8(1):50-51, 2005.

Lamon-Fava S, Barnett JB, Woods MN , McCormack C, McNamara JR, Schaefer EJ, Longcope C, Rosner B, and Gorbach SL : Differences in Serum Sex Hormone and Plasma Lipid Levels in Caucasian and African-American Premenopausal Women. The Journal of Endocrinology and Metabolism , 90 (8): 4516-4520, 2005.

2004

Remollino C, Brown H, Adelson-Mitty J , Clarke J, Spaulding A, Boardman L, Flanigan TP, Cu-Uvin S . Lower genital tract infections among HIV-seropositive and HIV-seronegative incarcerated women: a mandate for screening and treatment in prisons. J Correctional Health Care 10:527-42, 2004.

Barnett JB, Woods MN , Lamon-Fava S, Schaeffer E, McNamara J, Spiegelman D, Hertzmark E, Goldin BR, Longcope C, and Gorbach SL : Plasma Lipid and Lipoprotein Levels during the Follicular and Luteal Phases of the Menstrual Cycle. Journal of Clinical Endocrinology and Metabolism , 89:776-786, 2004.

Beckwith CG , Simmons E, Lally MA, Flanigan TP . Testing for HIV infection: Should it be routine? Resident & Staff Physician 2004; 50 (4): 9-15.

Crosby RA, DiClemente RJ, Wingood GM, Salazar LF, Rose E, Levine D, Brown L , Lescano C, Pugatch D, Flanigan T , Fernandez I, Schlenger W, Silver BJ. Associations between Sexually Transmitted Disease Diagnosis and Subsequent Sexual Risk and Sexually Transmitted Disease Incidence Among Adolescents. Sex Transm Dis 4:205-208, 2004.

Wilson, J., and Brown, L .: Preventing high-risk sexual behaviors among children and adolescents. In Handbook of Mental Health Interventions in Children and Adolescents: An Integrated Developmental Approach. (H. Stiener, Ed.). Jossey-Bass Publishers , 35: 963-982, 2004.

Cohen, Ron A.; Paul, Robert; Flanigan, Timothy ; Navia , Brad ford, Age Related HIV-Associated Neurocognitive Dysfunction: P05.120. Neurology. 62(7) Supplement S5:A408-A409, April 2004.

Quayle AJ, Shah M, Cu-Uvin S , Politch JA, Chou C, Anderson DJ, Tuomala R, Crowley-Nowick PA, Duerr A. Implications of blood contamination for assessment of local cellular immunity in the endocervix . AIDS Res Hum Retroviruses 20(5):543-6, 2004.

Min SS, Corbett AH, Rezk N, Cu-Uvin S , Fiscus SA, Petch L, Cohen MS, Kashuba AD. Protease Inhibitor and Nonnucleoside Reverse Transcriptase Inhibitor Concentrations in the Genital Tract of HIV-1-Infected Women. J Acquir Immune Defic Syndr . 15;37(5):1577-1580, Dec. 2004.

Paramsothy P, Duerr A, Heilig C, Cu-Uvin S , Anderson J, Schuman P, Klein R for the HER Study Group. Abnormal vaginal cytology in HIV-infected and at-risk women after hysterectomy. JAIDS 35:484-491, 2004.

Tohill B, Heilig C, Klein R, Rompalo A, Cu-Uvin S , Brown W, Duerr A. Vaginal flora morphotypic profiles and assessment of bacterial vaginosis in women at risk for HIV infection. Infect Dis Obstet Gynecol 12 :121-126, 2004.

De Groot AS , Bishop EA, Khan B, Lally M , Marcon L , Franco J, Mayer KH , Carpenter CC , Martin W. Engineering immunogenic consensus T helper epitopes for a cross-clade HIV vaccine. Methods . 2004 Dec;34(4):476-87 Bioinformatics in Vaccine Design.

Dong Y, Demaria S, Sun X, Santori FR, Jesdale BM, De Groot AS , Rom WN, Bushkin Y. HLA-A2-restricted CD8+-cytotoxic-T-cell responses to novel epitopes in Mycobacterium tuberculosis superoxide dismutase, alanine dehydrogenase, and glutamine synthetase. Infect Immun . 2004 Apr;72(4):2412-5.

Kumarasamy N, Saghayam S, Chaguturu S, Solomon S, Flanigan T , Yepthomi T, Balakrishnan P, Kalamalini A, Mayer K , and Wanke C : Lipoatrophy is the Predominant Presentation of HIV Associated Lipodystrophy in South India. Clinical Infectious Diseases , 38:1646-1647, 2004.

Grinstead O, Seal D, Wolitski R, Flanigan T , Fitzgerald C, Nealey-Moore J, Askew, J. HIV and STD Testing in Prisons: Perspectives of In-Prison Service Providers. AIDS Education and Prevention , 15(6): 547-559, 2004.

Forrester JE , Tucker KL, and Gorbach SL : Dietary Intake and Body Mass Index in HIV-Positive and HIV-Negative Drug Abusers of Hispanic Ethnicity . Public Health Nutrition , 7(7):863-870, 2004.

Freeman LM , Mansfield KG, Goldin BR, Woods MN , Gualtieri L, Li W, Bussell S, Lackner A, and Gorbach SL : Body Composition Changes in the Simian Immunodeficiency Virus-Infected Juvenile Rhesus Macaque . Journal of Infectious Diseases , 189:2010-2015, 2004.

Khan, W.A., Rogers, K.A., Karim, M.M., Ahmed S., Hibberd, P.L .,Calderwood, S.B., Ryan, E.T. and Ward, H.D. Cryptosporidiosis among Bangladeshi children with diarrhea: a prospective matched case control study of clinical features, epidemiology and systemic antibody responses. American Journal of Tropical Medicine and Hygiene . 71:412-9, 2004.

Hogan JW, Lee JY. Marginal structural quantile models for longitudinal observational studies with time-varying treatment. Statistica Sinica 1004; 14, 927-944

Hogan JW , Lin X, Herman B. Mixtures of varying coefficient models for longitudinal data with discrete or continuous non-ignorable dropout. Biometrics 2004;60, 854-864.

Hogan JW , Tchernis R. Bayesian factor analysis for spatially correlated data, with application to deriving indices of deprivation from area-level census data. Journal of the American Statistical Association 2004;99, 314-324.

Hogan JW , Roy J, Korkontzelou C (2004). Biostatistics tutorial: Handling dropout in longitudinal data. S tatistics in Medicine, 2004 May 15;23(9):1455-1497.

Hogan JW , Lancaster T (2004). Instrumental variables and inverse probability weighting for causal inference from longitudinal observational studies. Statistical Methods in Medical Research 2004 Feb; 13(1): 17-48.

Mahajan A, Hogan JW , Snyder B, Kumarasamy N, Mehta K, Solomon S, Carpenter CCJ, Mayer KH, Flanigan TP . Change in total lymphocyte count as a surrogate for change in CD4 count following initiation of HAART: Implications for monitoring in resource-limited settings. Journal of Acquired Immune Deficiency Syndrome (JAIDS) 2004;36, 567-575.

Kwara A , Carter EJ, Rich JD, Flanigan TP . Development of opportunistic infections after diagnosis of active tuberculosis in HIV-infected patients. AIDS Pt Care STDs 18(6):341-47, 2004.

Kent DM , Mwamburi DM, Bennish ML , Swingler G, Ioannnidis JPA: Do Clinical Trails in Sub-Saharan Africa Comply with Established International Treatment Guidelines? A Systematic Review. Journal of the American Medical Association , 292(2):237-242, 2004.

Lescano, C., Brown, L., Puster, K. and Miller, P.: Sexual abuse and HIV risk: an intervention framework. Journal of HIV/AIDS Prevention in Children & Youth , 6 (1), 38-57, 2004.

Macalino GE , Vlahov D, Sanford S, Patel S, Sabin K, Salas C, Rich JD . Prevalence and incidence of human immunodeficiency virus, hepatitis B virus and hepatitis C virus infections among males in Rhode Island prisons. Am J Pub Health 94(7):1218-23, 2004.

Macalino GE , Hou JC, Kumar MS, Taylor LE , Sumantera IG, Rich JD . Hepatitis C infection and incarcerated populations. Int'l J Drug Pol (15)2:103-114, 2004.

Macalino GE, Mitty JA , Bazerman LB, Singh K, McKenzie M, Flanigan T . Modified Directly Observed Therapy for the Treatment of HIV-Seropositive Substance Users: Lessons Learned from a Pilot Study. CID (Suppl 5):S393-397, 2004.

Kumarasamy N, Chaguturu S, Mayer KH , Solomon S, Tokugha H, Yepthomi , Balakrishnan P, Flanigan T . Incidence of Immune Reconstitution Syndrome in HIV-TB Co-infected Patients after Initiation of Generic Antiretroviral Therapy in India. J AIDS 37(5):1574-1576, 2004.

Balakrishnan P, Dunne M, Kumarasamy N, Crowe S, Subbulakshmi G, Ganesh AK, Cecelia AJ, Roth P, Mayer KH , Thyagarajan SP, Solomon S. An Inexpensive, Simple, and Manual Method of CD4 T-Cell Quantitation in HIV-Infected Individuals for Use in Developing Countries. JAIDS 36(5):1006-1010, 2004.

Colfax G, Vittinghoff E, Husnik MJ, McKirnan D, Buchbinder S, Koblin B, Celum C, Chesney M, Huang Y, Mayer K , Bozeman S, Judson FN, Bryant KJ, Coates TJ, and the EXPLORE Study Team. Substance Use and Sexual Risk: A Participant- and Episode-level Analysis among a Cohort of Men Who Have Sex with Men. American Journal of Epidemiology 159(10):1002-1012, 2004.

Hamburger ME, Moor J, Koenig L, Vlahov D, Schoenbaum EE, Schuman P, Mayer K for the HIV Epidemiology Research Study Group. Persistence of Inconsistent Condom Use: Relation to Abuse History and HIV Serostatus. AIDS and Behavior 8(3):333-344, 2004.

Harro CD, Judson FN, Gorse GJ, Mayer KH , Kostman JR, Brown SJ, Koblin B, Marmor M, Bartholow BN, Popovic V, for the VAX004 Study Group. Recruitment and Baseline Epidemiologic Profile of Participants in the First Phase 3 HIV Vaccine Efficacy Trial. JAIDS 37(3):1385-92, 2004.

Koblin B, Chesney M, Coates T, Husnik M, Beauchamp G, Huang Y, Bozeman S, Madison M, Buckbinder S, Celum C, Colfax G, Judson F, Mayer K , McKirnan D for the EXPLORE Study Team. Effects of a behavioural intervention to reduce acquisition of HIV infection among men who have sex with men: the EXPLORE randomized controlled study. The Lancet 364:41-50, 2004.

Lee D, Graham BS, Chiu Y-L, Gilbert PB, McElrath MJ, Belshe RB, Buckbinder SP, Sheppard HW, Koblin BA, Mayer KH , Keefer MC, Mulligan MJ, Celum CL. Breakthrough Infections during Phase 1 and 2 Prime-Boost HIV-1 Vaccine Trials with Canarypox Vectors (ALVAC) and Booster Dose of Recombinant gp 120 or gp 160. Journal of Infectious Diseases 190(5):903-907, 2004.

Mayer, KH , Safren SA, Gordon CM. HIV Care Providers and Prevention. JAIDS 37:S130-132, 2004.

Solomon SS, Pulimi S, Rodriguez II, Chaguturu SK, Kumar SKS, Mayer KH , Solomon S. Dried blood spots are an acceptable and useful HIV surveillance tool in a remote developing world setting. International Journal of STD & AIDS 15:658-661, 2004.

Merchant RC , Mayer K , Browning C. Development of Guidelines on Nonoccupational HIV Post-exposure Prophylaxis for the State of Rhode Island. Public Health Reports 119(2):136-140, 2004.

Kresina TF, Normand J, Khalsa J, Mitty J , Flanigan T , Francis H. Addressing the Need for Treatment Paradigms for Drug-Abusing Patients with Multiple Morbidities. CID (Suppl 5)38:S398-401, 2004.

Seal DW, Belcher L, Morrow K, Eldridge G, Binson D, Kacanek D, Margolis AD, McAuliffe T, Simms R, and the Project START Study Group. Substance use and sexual behavior of men while incarcerated in the United States: Perceptions and experiences. Health Education and Behavior 31(6), 775-789, 2004.

Morrow, K ., Costello, T . (2004). HIV, STD and Hepatitis Prevention among Women in Methadone Maintenance: A Qualitative and Quantitative Needs Assessment. AIDS Care, (16) 4, 426-433.

Mwamburi DM , Gerrior J, Wilson, I.B ., Chang, H., Scully E., Sabonoi, S., Miller, L., Forfia, J., Albucht, M., and Wanke, C.A. Comparing Megesterol Acetate Therapy for HIV-Related Weight Loss: Similar Results in 2 Months. Clinical Infectious Diseases 2004; 38(6): 895-902.

Mwamburi DM , Gerrior J , Wilson IB , Chang H., Scully E, Saboni S, Miller L, Forfia J, Albucht M, and Wanke CA : Comparing Megestrol Acetate, Oxandrolone, and Dietary Advice Restores Weight in Human Immunodeficiency Virus. Nutrition in Clinical Practice , 19:395-402, 2004.

Navia , Brad ford ; Rostasy, Kevin; Gorgun, Gullue; Mathys, Jean Marie; Skolnik, Paul , TNF-Alpha Leads to Increased Cell Surface Expression of CXCR4 in SK-N-MC Cells: Another Mechanism of Neuronal Injury in the HIV-Infected Brain: P05.122 . Neurology. 62(7) Supplement S5:A409, April 2004.

Schifitto, Giovanni; Simpson, David; Navia , Brad ford A Placebo-Controlled Study of Memantine for the Treatment of HIV-Associated Sensory Neuropathy: P05.114 . Neurology. 62(7) Supplement S5:A406, April 2004

O'Connor, R ., Mackay, M. R., Ward, H. D. Molecular approaches for diagnosis, speciation and genotyping of Cryptosporidium . In Molecular Microbiology, Diagnostic Principles and Practice . D. H. Persing, F. C. Tenover, J. Versalovic, Y. Tang, E. Unger, D.A. Relman and T.J. White, Eds., ASM Press, Washington, D.C. pp. 583-602, 2004.

Paul, Robert H. ; Cohen, Ron A. ; Ernst, Thomas; Navia , Brad ; Tate, David, Brain Morphometric Correlates of Cognitive Function in HIV Patients: Relationship to Disease Severity: P05.115 . Neurology. 62(7) Supplement S5:A407, April 2004

Shah, P., Paul, R ., Gold, R., Tashima, K., Flanigan, T . Treating HIV encephalopathy with antiretroviral therapy: a clinical case demonstrating the success of HAART. Clin Infect Dis , 39(10),1545-1547, 2004.

Theng T, Phan S, Pugatch D , Harwell J , Rufner KM, Chhi Mean V, Mayer KH , Cu-Uvin S . HIV prevalence of parturient women in Sihanoukville, Cambodia . International J of STD & AIDS 15:419-421, 2004.

Chhin S, Rozycki G, Pugatch D , Harwell JI . Aetiology of Meningitis in HIV-Infected Patients in a Referral Hospital in Phnom Penh, Cambodia, International Journal of STD and AIDS 15:48-50, 2004.

Combs CM, Soares JJ, O'Connell JV, D'Angelo LJ and Pugatch DL . Sexual Risk Behaviors and Polysubstance Use in Young Intranasal Heroin Users. Substance Abuse 25:61-62, 2004.

Obaro SK, Pugatch D and Luzuriaga K. Immunogenicity and efficacy of childhood vaccines in HIV-1-infected children. The Lancet Infectious Diseases 4:510-518, 2004.

Theng T, Sok P, Pugatch D, Harwell JI , Rufner KM, Chhi Mean V, Mayer KH, Cu-Uvin S. HIV-1 Cord-blood Seroprevalence of Parturient Women in Sihanoukville, Cambodia. International Journal of STD & AIDS 15:419-421, 2004.

Ramratnam, B ., Ribeoro, R., He, T., Chung, C., Simon, V., Vanderhoeven, J., Hurley, A., Zhang, L., Perelson, A.S., Ho, D.D., Markowitz, M. (2004) Intensification of antiretroviral therapy accelerates the decay of the HIV-1 latent reservoir and decreases but does not eliminate ongoing virus replication. JAIDS 35: 33-37 .

Rich JD , McKenzie M, Macalino GE , Taylor LE , Sanford-Colby S, Wolf F, McNamara S, Mehrotra M, Stein MD . A syringe prescription program to prevent infectious disease and improve health of injection drug users. J Urban Health 81(1):122-34, 2004.

Rich JD , Taylor LE , Allen SA. Screening for hepatitis C virus infection in adults. Ann Int Med 141(7):575-6, 2004.

Rosengard, C ., Anderson, B., & Stein, M. D . (2004). Intravenous drug users' HIV-risk behaviors with primary/other partners. The American Journal of Drug and Alcohol Abuse, 30(2), 225-236.

Rosengard, C ., Adler, N. E., Millstein, S. G., Gurvey, J. E. & Ellen, J.M. (2004). Perceived STD risk, relationship and health values in adolescents' delaying sexual intercourse with new partners. Sexually Transmitted Infections, 80(2), 130-137.

Rosengard, C ., Phipps, M., Adler, N. E., & Ellen, J. M. (2004). Adolescent pregnancy intentions and pregnancy outcomes: A prospective examination. Journal of Adolescent Health, 35(6), 453-461.

Stein MD, Solomon DA, Herman DS, Anthony JL, Ramsey SE , Anderson BJ, Miller I. Pharmacotherpy pluspsychotherapy for treatment of depression in active injection drug users. Arch Gen Psych 2004;61:152-59.

Stein MD , Herman DS, Solomon DA, Anthony JL, Anderson BJ, Ramsey SE , Miller I. Adherence to treatment of depression in active injection drug users: The Minerva Study. J Sub Abuse Treat 2004;26:87-93.

Stein MD , Herman DS, Bishop S, Lassor JA, Weinstock M, Anthony J, Anderson BJ. Sleep disturbances among methadone maintained patients. J Sub Abuse Treat 2004;26:175-180.

Tobin K, Tang AM , Gilbert SH, Latkin CA: Correlates of HIV Antibody Testing among a Sample of Injection Drug Users: The Role of Social and Contextual Factors. AIDS Behavior , 8(3):303-310, 2004.

Wanke, C, et. al : The Approach to Diagnosis and Treatment of HIV Wasting. JAIDS . Management of HIV Wasting Syndrome: A Consensus conference. 37(Suppl 1):S284-S288, December 1, 2004.

Murahainen N, Kotler D, Grunfeld C, Wanke CA : Thompson M, Saag M, Bock D, Gertner JM. Effects of Growth Hormone on Abnormal Visceral Adipose Tissue Accumulation and Dyslipidemia in HIV-Infected Patients. JAIDS , 35:239-252, 2004.

Ramachandran G, Perloff E, von Moltke L, Swaminathan S, Wanke CA , Greenblatt DJ: Analysis of Generic Antiretroviral Formulations Manufactured in India. AIDS ,18:1482-1484, 2004.

Murahainen N, Kotler D, Grunfeld C, Wanke CA : Thompson M, Saag M, Bock D, Gertner JM. Effects of Growth Hormone on Abnormal Visceral Adipose Tissue Accumulation and Dyslipidemia in HIV-Infected Patients. JAIDS , 35:239-252, 2004.

Ramachandran G, Perloff E, von Moltke L, Swaminathan S, Wanke CA , Greenblatt DJ: Analysis of Generic Antiretroviral Formulations Manufactured in India. AIDS ,18:1482-1484, 2004.

Wanke CA , Kotler D, and the HIV Wasting Collaborative Consensus Committee: Collaborative Recommendations: The Approach to Diagnosis and Treatment of HIV Wasting. JAIDS , 37:S284-S288, 2004.

Wanke CA . Pathogenesis and Consequences of HIV-Associated Wasting . JAIDS , 37(S5):S277-S279, 2004.

Kotler D, Wanke CA : Management of HIV Wasting Syndrome: A Consensus Conference. JAIDS , 37:S261, 2004.

Chen, X.M., O'Hara, S.P., Huang, B.Q., Nelson, J.B., Lin, J.J.C., Zhu, G., Ward, H.D., and LaRusso, N.F. Apical Organelle Discharge by Cryptosporidium parvum Is Temperature-, Cytoskeleton- and Intracellular Calcium-Dependent and Required for Host Cell Invasion. Infection and Immunity 72:6806-16, 2004.

Landon BE, Wilson IB , McInnes K, Landrum MB, Hirshhorn L, Marsden PV, Gustafson D, Cleary PD. Effects of a quality improvement collaborative on the outcome of care of patients with HIV infection: the EQHIV study. Ann Intern Med 2004;140:887-896.

Laws BM, Heckscher R, Mayo SJ, Li W, Wilson IB . A new method for evaluating the quality of medical interpretation and some preliminary results . Med Care 2004;42:71-80.

McInnes K, Landon BE, Malitz FE, Wilson IB , Marsden PV, Fleishman JA, Gustafson DH, Cleary PD. Differences in patient and clinic characteristics at CARE Act funded versus non-Care Act funded HIV Clinics. Aids Care 2004;16:851-857.

Schneider J, Kaplan SH, Greenfield S, Li W, Wilson IB . Better physician-patient relationships are associated with higher reported adherence to antiretroviral therapy in patients with HIV infection. J Gen Intern Med 2004;19:1096-1103.

Deuffic-Burban S, Wong JB , Valleron AJ, Costagliola D, Delfraissy JF, Poynard T. Comparing the public health burden of chronic hepatitis C and HIV infection in France. Journal of Hepatology 2004;40(2):319-26.

Deuffic-Burban S, Wong JB , Valleron AJ, Costagliola D, Delfraissy JF, Poynard T. The rising health and economic burden of chronic hepatitis C. Journal of Hepatology 2004;41(2):354-5.

Ishida H, Inoue Y, Wong JB , Okita K. Cost-effectiveness of ribavirin plus interferon alpha-2b for either interferon relapsers or non-responders in chronic hepatitis C: a Japanese trial. Hepatology Research 2004;28(3)125-36.

King WD, Wong MD , Shapiro MF, Landon BE, Wilson IB , Cunningham WE. Does racial concordance between HIV positive patients and their physicians affect the time of receipt of protease inhibitors?. J Gen Intern Med 2004;19:1146-53.

Krahn M, Wong JB , Heathcote J, Scully L, Seeff L. Estimating the prognosis of hepatitis C patients infected by transfusion in Canada between 1986 and 1990. Medical Decision Making 2004;24(1):20-29.

Marshall DA, Kleinman SH, Wong JB , AuBuchon JP, Grima DT, Kulin NA, Weinstein MC. Cost-effectiveness of nucleic acid test screening of volunteer blood donations for hepatitis B, hepatitis C, and human immunodeficiency virus in the United States. Vox Sanguinis , 2004;86(1):28-40.

Wong MD , Cunnintham WE, Shapiro MF, Anderson RM, Cleary PD, Duan N, Liu HH, Wilson IB , Landon BE, Wenger NS for the HCSUS Con sortium. Disparities in HIV treatment and physician attitudes about delaying protease inhibitors for non-adherent patients. J Gen Intern Med 2004;19;366-374.

2003

Gee, G., Manley, K., and W.J. Atwood. 2003. Derivation of a JC Virus resistant human glial cell line: Implications for the identification of host cell factors that determine viral tropism. Virology. 314(1):101-9, 2003 Sep 15.

Baum, S., Ashok, A., Gee, G., Eash, S., Querbes, W., Jordan, J., and Walter J. Atwood. 2003. Early events in the life cycle of JC Virus (JCV) as potential therapeutic targets for the treatment of Progressive Multifocal Leukoencephalopathy (PML) , J. NeuroVirol . . 9 Suppl 1:32-7, 2003.

Ashok, A., and W.J. Atwood . 2003. Contrasting roles of endosomal pH and the cytoskeleton in infection of human glial cells by JC Virus and SV40. J. Virol . 77:1347-1356.

Beckwith CG , Mitty J , Flanigan TP . Confronting the uncertainty regarding syphilis. In: Antiretroviral Rounds; AIDS Clinical Care 2003; 15: 64-65.

Boden, D., Pusch, O ., Lee, F., Tucker, L., Shank, P.R., Ramratnam, B . (2003) Promoter choice affects the potency of HIV-1 specific RNA interference. Nucleic Acids Research 31 : 5033-5038

Boden, D., Pusch, O. , Lee, F., Tucker, L., Shank, P., Ramratnam, B. (2003). Nucleotide sequence homology requirements of HIV-1 specific shRNA. Nucleic Acids Research. 31: 6444-6449

Boden, D., Pusch, O. , Lee, F., Tucker, L., Ramratnam, B. (2003) HIV-1 escape from RNA interference. Journal of Virology 77 : 11531-11535

Butler, R., Schultz, J., Forsberg, A., Brown, L., Parsons, J., King, G., Kocik, S., Jarvis, D. and Manco-Johnson, M. & the CDC Adolescent HBIEP Study Group: Promoting safer sex among HIV-positive youth with haemophilia: theory, intervention & outcome, Haemophilia , 9: 214-222, 2003.

DePasquale MP, Brown AJL, Cu-Uvin S , Ingersoll J, Caliendo A, Sutton L, Donahue S, D'Aquila R. Differences in HIV-1 pol sequences from female genital tract and blood during antiretroviral therapy. J Acquir Immune Defic Syndr 34:37-44,2003.

Duerr A, Helig CM, Miekle SF, Cu-Uvin S , Klein RS, Rompalo A, Sobel JD. HER Study Group. Incident and persistent vulvovaginal candidiasis among human immunodeficiency virus-infected women; risk factors and severity. Obstet Gynecol 101(3):548-56, 2003.

Harlow S, Cohen M, Ohmit S, Schuman P, Cu-Uvin S , Lin X, Greenblatt R, Gurtman A, Khalsa A, Minkoff H, Young M, Klein R. Substance use and psychotherapeutic medications: a likely contributor to menstrual disorders in HIV-seropositive women. Am J Obstet Gynecol 188:881-886, 2003.

Madhivanan P, Cu-Uvin S , Govindaraian M, Mayer K , Wilson K, Hemalatha R, Solomon S . Prevalence of cervical dysplasia among women attending HIV care in Chennai, South India. J of Obstet Gynecol of India 53: 367-370, 2003.

Schuman P, Ohmit S, Klein R, Duerr, Cu-Uvin S , Jamieson D, Anderson J, Shah K for the HERS. Longitudinal study of cervical squamous intraepithelial lesions in human immunodeficiency virus (HIV)- seropositive and at-risk HIV-seronegative women. J Infect Dis 188:128-136, 2003.

Strickler HD, Palefsky JM, Shah KV, Anastos K, Klein RS, Minkoff H, Duerr A, Massad LS, Celentano DD, Hall C, Fazzari M, Cu-Uvin S , Beacon M, Schuman P, Levine AM, Durante AJ, Gange S, Melnick S, Burk R. Human papillomavirus 16 and immune status in human immunodeficiency virus-seropositive women. J Natl Cancer Inst 95:1062-71, 2003.

Viscidi R, Ahdieh-Grant L, Clayman B, Fox K, Massad L, Cu-Uvin S , Shah K, Anastos K, Squires K, Duerr A, Jamieson D, Burk R, Klein R, Minkoff H, Palefsky J, Strickler H, Schuman P, Piessens E, Miotti P. Serum immunoglobluin G response to human papillomavirus type 16 virus-like particles in human immunodeficiency virus (HIV)-positive and risk-matched HIV-negative women. J Infect Dis 187: 194-205, 2003.

DeGroot AS , Jesdale B, Martin W, Saint Aubin C, Sbai H, Bosma A, Lieberman J, Skowron G , Mansourati F, Mayer KH . Mapping cross-clade HIV-1 vaccine epitopes using a bioinformatics approach. Vaccines 21:4486-5405, 2003.

DeGroot AS , J. Rayner, W. Martin. Modeling the immunogenicity of therapeutic proteins using T cell epitope mapping . In: Immunogenicity of Therapeutic Biological Products. Developments in Biologicals. Fred Brown, Anthony Mire Suis, editors. Basel, Karger, 2003. Vol 112:71-80.

DeGroot AS , Vishvanath Nene, Nagendra R. Hedge, S. Srikumaran, James Rayner and William Martin. T Cell Epitope Identification for Bovine Vaccines: An Epitope Mapping Method for BoLA A-11. International Journal for Parasitology (Thematic Issue on Vaccines, David Brake Editor, 33: 641 - 653; 2003.

DeGroot AS , Hakima Sbai, Bill Jesdale, W. Martin, C. Saint Aubin, H. Sbai, A. Bosma, Judy Lieberman, G.A. Skowron, Fadi Mansourati, Ken Mayer . Mapping Cross-clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine 21 (2003) 4486-4504. http://www.sciencedirect.com/science/journal/0264410X .

Lopes AR, Jaye A, Dorrell L, Sabally S, Alabi A, Jones NA, Flower DR, De Groot AS , Newton P, Lascar RM, Williams I, Whittle H, Bertoletti A, Borrow P, Maini MK. Greater CD8+ TCR heterogeneity and functional flexibility in HIV-2 compared to HIV-1 infection. J Immunol . 2003 Jul 1;171(1):307-16.

Kumarasamy N, Solomon S. Chaguturu SK, Mahajan AP, Flanigan TP , Balakrishnan P, Mayer KH . Safety, Tolerability and Effectiveness of Generic Antiretroviral Drug Regimens for HIV-infected Patients in South India. AIDS 17(15):2267-2269, 2003.

Lemon SC, Friedmann PD , Stein MD . The Impact of Smoking Cessation On Drug Abuse Treatment Outcome. Addictive Behavior , 2003;28(7):1323-1331.

Forrester JE and Gorbach SL : Fat Distribution in Relation to Drug Use, Human Immunodeficiency Virus (HIV) Status, and the Use of Antiretroviral Therapies in Hispanic Patients with HIV Infection. Clinical Infectious Diseases , 37:S62-S68, 2003.

Friedmann PD , Lemon S , Stein MD , D'Aunno TA. Accessibility of addiction treatment: results from a national survey of outpatient substance abuse treatment organizations. Health Serv Res . 2003; 38(3): 887-903.

Friedmann PD , Zhang Z, Hendrickson J, Stein MD , Gerstein DR. The effect of primary medical care on addiction and medical severity in substance abuse treatment programs. J Gen Intern Med 2003;18:1-8.

Friedmann PD , Lemon S, Anderson BJ, Stein MD . Predictors of follow-up health status in the Drug Abuse Treatment Outcome Study (DATOS). Drug Alc Depend . 2003;69:243-51.

Harwell JI, Moench T, Mayer KH , Chapman S, Rodriguez I, Cu-Uvin S . A pilot study of treatment of bacterial vaginosis with a buffering vaginal microbicide. J Women's Health 12: 255-259, 2003.

Senya S, Mehta A, Harwell JI , Pugatch D , Flanigan T , Mayer KH . Spectrum of opportunistic infections in hospitalized HIV-infected patients in Phnom Penh, Cambodia. Intl J STD & AIDS 14:411-6, 2003.

Sheth AA, Harwell JI , Tashima KT . Guillain-Barré syndrome and acute HIV seroconversion. Infect Med 20:559-61, 2003.

Harwell J , Flanigan TP, Mitty J, Macalino G , Caliendo A, Ingersoll J, Stenzel M, Carpenter CCJ, Cu-Uvin S . Directly observed antiretroviral therapy to reduce genital tract and plasma HIV-1 RNA in women with poor adherence. AIDS 17:1990-1993, 2003.

Harwell JI , Moench T, Mayer KH , Chapman S, Rodriguez I, Cu-Uvin S. A pilot study of treatment of bacterial vaginosis with a non-antibiotic topical buffering agent. Journal of Women's Health and Gender Based Medicine 12:255-259, 2003.

Hendricks KM , Dong KR, Tang AM , Ding B, Spiegelman D, Woods MN , and Wanke CA : A High Fiber Diet in HIV Positive Men as Associated with Lower Risk of Developing Fat Deposition. American Journal of Clinical Nutrition , 78:790-795, 2003.

Ko H, Hogan JW , Mayer KH . Estimating causal treatment effects from longitudinal HIV natural history studies using marginal structural models. Biometrics 2003; 59:152-162. *

Jacobson DL , Bica I, Knox TA, Wanke CA , Tchetgen E, Spiegelman D, Silva M, Gorbach SL, and Wilson IB ; Difficulty Swallowing and Lack of Receipt of Highly Active Antiretroviral Therapy Predict Acute Weight Loss in Human Immunodeficiency Virus Disease. Clinical Infectious Diseases, 37(10):1349-1356, 2003.

Jacobson DL , Wu AW, Feinberg J: Health Related Quality of Life Predicts Survival, CMV Disease, and Study Retention in Clinical Trial Participants with Advanced HIV Disease. Journal of Clinical Epidemiology , 56:874-879, 2003.

Jones CY , Hogan JW , Snyder B, Klein RS, Rompalo A, Schuman P, and Carpenter CC for the HIV Epidemiology Research Study Group: Overweight and Human Immunodeficiency Virus (HIV) Progression in Women: Associations HIV Disease Progression and Changes in Body Mass Index in Women in the HIV Epidemiology Research Study Cohort. Clinical Infectious Diseases, 37(Suppl2):S69-S80, 2003.

Knox TA , Zafonte M, Fields-Gardner C, Moen K, Peabody D, Paton N: Assessment of Nutritional Status, Body Composition, and Human Immunodeficiency Virus-Associated Morphologic Changes. Clinical Infectious Diseases , 36(Suppl 2):S63-S68, 2003.

Luri M , Williams B, Sturm AW, Zuma K, Mwamburi DM, Garnett GP, Karim SSA: Migration and the Spread of HIV: Prevalence and risk Factors among Migrants and their Partners and Non-Migrants and their Partners. Sexually Transmitted Diseases , 30(2):149-156, February, 2003.

Lurie MN , Williams BG, Zuma K, Mkaya-Mwamburi D , Garnett G, Sturn AW, Sweat MD, Gittelsohn J, Abdool Karim SS. The impact of migration on HIV-1 transmission in South Africa: a study of migrant and nonmigrant men and their partners. Sex Transm Dis. 2003 Feb;30(2):149-56.

Macalino GE , Ko H, Celentano DD, Hogan JW , Schoenbaum EE, Schuman P, Rich JD for the HER Study Group. Drug use patterns over time among HIV-seropositive and HIV-seronegative women: the HER study experience. JAIDS HR 33(4):500-5, 2003.

Mayer KH , Hogan JW , Smith D, Klein RS, Schuman P, Margolick JB, Korkontzelou C, Farzedegan H, Vlahov D, Carpenter CCJ (2003). Clinical and immunologic progression in HIV-infected US women before and after the introduction of highly active antiretroviral therapy. Journal of Acquired Immune Deficiency Syndrome (JAIDS) 33, 614-624

Kumarasamy N, Solomon S, Flanigan R, Hemalatha R, Thyagarajan SP, Mayer K . Natural history of HIV disease in southern India. Clin Infect Dis 36:79-85, 2003.

Cavacini LA, Kuhrt D, Duval M, Mayer K , Posner MR. Binding and Neutralization Activity of Human IgG1 and IgG3 from Serum of HIV-Infected Individuals. AIDS Research and Human Retroviruses 19(9):785-792, 2003.

Chesney MA, Koblin BA, Barresi PJ, Husnik MJ, Celum CL, Colfax G, Mayer K , McKirnan D, Judson FN, Huang Y, Coates TJ, and the EXPLORE Study Team. An Individually Tailored Intervention for HIV Prevention: Baseline Data from the EXPLORE Study. American Journal of Public Health 93(6):933-938, 2003.

Koblin BA, Chesney MA, Husnik MJ, Bozeman S, Celum CL, Buchbinder S, Mayer K , McKirnan D, Judson FN, Huang Y, Coates TJ, and the EXPLORE Study Team. High-Risk Behaviors Among Men Who Have Sex With Men in 6 US Cities: Baseline Data from the EXPLORE Study. American Journal of Public Health 93(6):926-932, 2003.

Mayer KH , Karim SA, Kelly C, Maslankowski L, Rees H, Profy AT, Day J, Welch J, Rosenberg Z, for the HIV Prevention Trials Network (HPTN) 020 Protocol Team. Safety and tolerability of vaginal PRO 2000 gel in sexually active HIV-uninfected and abstinent HIV-infected women. AIDS 17(3):321-329, 2003.

Mayer KH , Hogan JW, Smith D, Klein RS, Schuman P, Margolick JB, Korkontzelou C, Farzedegan H, Vlahov D, Carpenter, CCJ , for the HIV Epidemiology Research Study (HERS) Group. Clinical and Immunologic Progression in HIV-Infected US Women Before and After the Introduction of Highly Active Antiretroviral Therapy . JAIDS 33(5):614-624, 2003.

Mayer KH , Cohen DE. Primary Care: Daily Management of HIV-Infected Patients in Dolin R, Masur H, Saag MS, AIDS Therapy . Elseivier Science, St. Louis, MO, 2 nd edition 2003, 706-719.

Mayer, K . The Real Global Threat (review of film "Pandemic: Facing AIDS"), Brown Alumni Magazine , May/June 2003, 54-55.

Natividad-Villaneuva G, Santiago E, Manalastas R, Brown HW, Ingersoll J, Caliendo AM, Mayer KH , Cu-Uvin S . Human immunodeficiency virus in the plasma and cervicovaginal secretions in Filipino women. International Journal of STD & AIDS 14:826-829, 2003.

Ohmit SE, Sobel JD, Schuman P, Duerr A, Mayer K , Rompalo A, Klein RS, for the HIV Epidemiology Research Study (HERS) Group. Longitudinal Study of Mucosal Candida Species Colonization and Candidiasis among Human Immunodeficiency Virus (HIV)-Seropositive and At-Risk HIV-Seronegative Women. Journal of Infectious Diseases 188(1):118-127, 2003.

Powderly WG, Mayer KH . Centers for Disease Control and Prevention Revised Guidelines for Human Immunodeficiency Virus (HIV) Counseling, Testing, and Referral: Targeting HIV Specialists. Clinical Infectious Diseases 37(6):813-819, 2003.

Renzi C, Douglas JM Jr., Foster M, Critchlow CW, Ashley-Morrow A, Buchbinder SP, Koblin BA, McKirnan DJ, Mayer KH , Celum CL: Herpes Simplex Virus Type 2 Infection as a Risk Factor for Human Immunodeficiency Virus Acquisition in Men Who Have Sex with Men. The Journal of Infectious Diseases 187(1):19-25, 2003.

Stover CT, Smith DK, Schmid DS, Pellett PE, Stewart JA, Klein RS, Mayer K , Vlahov D, Schuman P, Cannon MJ, for the HIV Epidemiology Research Study Group. Prevalence of and Risk Factors for Viral Infection among Human Immunodeficiency Virus (HIV)-Infected and High-Risk HIV-Uninfected Women. Journal of Infectious Diseases 187(9):1388-1396, 2003.

Sugihantono A, Slidell M, Syaifudin A, Pratjojo H, Utami IM, Sadjimin T, Mayer KH . Syphilis and HIV Prevalence among Commercial Sex Workers in Central Java, Indonesia: Risk-Taking Behavior and Attitudes that May Potentiate a Wider Epidemic. AIDS Patient Care and STDs 17(11):595-600, 2003.

McDermott AY , Shevitz AH , Must A, Harris S, Roubenoff R , and Gorbach SL : Nutrition Treatment for HIV Wasting: A Prescription for Food as Medicine. Nutrition in Clinical Practice, 18:86-96, 2003.

Urbina BY, Merchant RC , Mayer KH . Case Studies on Nonoccupational Postexposure HIV Prophylaxis. Medicine and Health/Rhode Island 86(6):175-177, 2003.

Merchant RC , Becker BM, Mayer KH , Fuerch J, Schreck B. Emergency Department Blood or Body Fluid Exposure Evaluations and HIV Post Exposure Prophylaxis Usage. Academic Emergency Medicine 10(12):1345-1353, 2003.

Mitty JA , Macalino G, Taylor L, Harwell JI, Flanigan TP . Directly observed therapy (DOT) for individuals with HIV: successes and challenges. MedGenMed 5:30, 2003.

MacGowan, R.J., Margolis, A., Gaiter, J., Morrow, K ., Zack, B., Askew, J., McAuliffe, T., Sosman, J.M., Eldridge, G., and the Project START Study Group. (2003). Predictors of risky sex of young men after release from prison. International Journal of STD and AIDS , 14, 519-523.

Mason, T.H., Foster, S.E., Finlinson, H.A., Morrow, K.M ., Rosen, R., Vining-Bethea, S., Joanis, C.L., Hammet, T.M., Seage, G.R. (2003). Perspectives on vaginal microbicides among women with drug-related HIV risks in three cities in the U.S. and Puerto Rico. AIDS & Behavior , 7, 339-351.

Morrow, K ., Rosen, R., Richter, L., Emans, A., Forbes, A., Day, J., Morar, N., Maslankowski, L., Profy, A.T., Kelly, C., Abdool Karim, S., & Mayer, K . (2003). The acceptability of an investigational vaginal microbicide, PRO 2000 Gel in the context of a Phase I clinical trial. Journal of Women's Health , 12(7), 655-666.

Kent DM, Mwamburi DM, Cash R, Rabin T, Bennish ML : Testing Therapies Less Effective than the Best Current Standard: Ethical Beliefs in an International Sample of Researchers. American Journal of Bioethics , April, 2003.

Lurie M , Williams B, Sturm AW, Zuma, Mwamburi DM, Garnett GP, Karim SSA: Who Infects Whom? HIV-1 Concordance and discordance among Migrant and Non-Migrant Couples in South Africa. AIDS , 17(15):2245-2252, October 17, 2003.

Rostasy, Kevin; Egles, Christophe; Chauhan, Ashok; Kneissl, Michelle; Bahrani, Padmanabhan; Yiannoutsos, Constantin; Hunter, Dale D.; Nath, Avindra; Hedreen, John C.; Navia , Brad ford A .; SDF-1[alpha] Is Expressed in Astrocytes and Neurons in the AIDS Dementia Complex: An In Vivo and In Vitro Study. Journal of Neuropathology & Experimental Neurology. 62(6):617-626, June 2003.

O'Connor, R.M ., Kim, K., Khan, F., and Ward, H. Expression of Cpgp40/15 in Toxoplasma gondii : a surrogate system for the study of Cryptosporidium glycoprotein antigens. Infect Immun . 71:6027-34, 2003.

Paul, R ., Cohen, R., Stern, R. Neuropsychiatric and neurobehavioral functioning in human immunodeficiency virus. CNS Spectrums , 7(12):860-866, 2003.

Rich JD , Taylor LE , Mehrotra M, Mason R, Stozek M, Stancliff S. Prescribing syringes to injection drug users: what the family physician should know. Am Fam Phys , 68(1):45-7, 2003.

Clarke J, Schwartzapfel B, Pomposelli J, Allen S, Spaulding A, Rich JD . Hepatitis B vaccination of incarcerated women: a pilot program. J Health Care Poor Underserved 14(3):318-23, 2003.

Allen SA, Rich JD , Schwartzapfel B, Friedmann PD . Hepatitis C among offenders: correctional challenge and public health opportunity. Federal Probation 67(2):22-6, 2003.

Rich JD, Ching CG, Lally MA , Murphy MA, Schwartzapfel B, Charuvastra A, Beckwith C , Flanigan TP . A review of the case for hepatitis B vaccination of high-risk adults. Am J Med 114:316-8, 2003.

Bairos L, Dawson-Hughes B, Roubenoff R : Comparison of Whole and Regional Body Composition Measured by Hologic QDR-200 and Lunar DPX-L dual-energy X-ray absorptiometry (DXA). Journal of Body Composition Research, 1:17-22, 2003.

Safren SA , Hendriksen ES, DeSousa N, Boswell SL, Mayer KH . Use of an on-line pager system to increase adherence to antiretroviral medications. AIDS Care 15(6):787-793, 2003.

Stein MD , Anderson BJ. Nicotine and drug interaction expectancies among methadone maintained cigarette smokers. J Sub Abuse Treatment , 2003;24:357-361.

Stein MD , Solomon DA, Herman DS, Anderson BJ, Miller I. Depression severity and HIV injection risk behavior . Am J Psychiatry 2003;160:1659-62.

Bica I, Tang AM , Skinner S, Spiegelman D, Knox T, Gorbach S, Wilson IB . Use of complementary and alternative therapies by patients with HIV disease in the era of highly active antiretriviral therapy. J Altern Complement Med 2003;9:65-76.*

Tashima KT , Bausserman L , Alt EN, Aznar E, Flanigan TP . Lipid changes in patients initiating efavirenz- and indinavir-based antiretroviral regimens. HIV Clin Trials 4:29-36, 2003.

Tashima KT , Alt DN, Harwell JI , Fiebich-Perez DK, Flanigan TP . Internet sex seeking leads to acute HIV infection: A report of two cases. International J of STD and AIDS 14(4):285-6, 2003.

Tate D , Paul RH , Cohen R , Tashima K, Nash J , Adair C, Boland R , Flanigan TP . The impact of apathy on quality of life in patients infected with HIV. AIDS Patient Care and STDs 17(3):115-120, 2003

Allen SA, Spaulding AC, Osei AM, Taylor LE , Cabral AM, Rich JD . Treatment of chronic hepatitis C in a state correctional facility. Ann Int Med 138(3):187-90, 2003.

Wanke CA , Silva M, Ganda A, Fauntleroy J, Spiegelman D, Knox TA , and Gorbach SL : Role of Acquired Immune Deficiency Syndrome: Defining Conditions in Human Immunodeficiency Virus-Associated Wasting. Clinical Infectious Diseases , 37 (Supp 2):S81-S84, 2003.

Hicks C, Currier J, Sax P, Sherer R, Wanke CA : Current Management Challenges in HIV: Tolerability of Antiretrovirals and Metabolic Complications. AIDS Patient Care and Standards , 17(5):221-233, 2003.

Hicks C, Currier J, Sax P, Sherer R, Wanke CA : Current Management Challenges in HIV: Tolerability of Antiretrovirals and Metabolic Complications. AIDS Patient Care and Standards , 17(5):221-233, 2003.

Chen, L., Williams, B.R., Yang, C-Y., Cevallos, A.M., Bhat, N., Ward, H.D . , and Sharon, J. Polyclonal Fab Phage Display Libraries with a High Percentage of Diverse Clones to Cryptosporidium parvum Glycoproteins . International Journal of Parasitology , 33:281-91, 2003.

Landon BE, Wilson IB , Wenger NS, Cohen SE, Fichtenbaum CJ, Bozzette SA, Shapiro MF, Cleary, PD. Physician specialization and antiretroviral therapy for HIV: Adoption, use, and adherence in a national probability sample of persons infected with HIV. J Gen Intern Med 2003;18:233-241.

Buti M, Medina M, Casado MA, Wong JB , Fosbrook L, Esteban R. A cost-effectiveness analysis of peginterferon alfa-2b plus ribavirin for the treatment of naive patients with chronic hepatitis C. Alimentary Pharmacology and Therapeutics 2003;17:687-94.

Davis GL, Wong JB , McHutchison JG, Manns MP, Harvey J, Albrecht J. Early virologic response to treatment with pegylated interferon alfa-2b plus ribavirin in patients with chronic hepatitis C. Hepatology 2003;38(3):645-52.

Siebert U, Sroczynski G, Rossol S, Wasem J, Ravens-Sieberer U, Kurth BM, Manns MP, McHutchison JG, Wong JB , German Hepatitis C Model (GEHMO) Group, International Hepatitis Interventional Therapy Group. Cost-effectiveness of peginterferon alfa-2b plus ribavirin versus interferon alfa-2b plus ribavirin for initial treatment of chronic hepatitis C. Gut 2003;52(3):425-32.

Wong JB , Davis GL, McHutchison JG, Manns MP, Albrecht JK, for the International Hepatitis Interventional Therapy (IHIT) Group. Economic and clinical effects of evaluating rapid virological response to peginterferon alfa-2b plus ribavirin for the initial treatment of chronic hepatitis C. American Journal of Gastroenterology 2003;98(11):2354-62.

Woods MN , Tang AM , Forrester JE , Jones CY, Hendricks KM , Ding B, and Knox TA : Effect of Dietary Intake and Protease Inhibitors on Serum Vitamin B 12 Levels in a Cohort of Human Immunodeficiency Virus-Positive Patients . Clinical Infectious Diseases , 37(Suppl 2):S124-S131, 2003.

2002

Komagome, R., Sawa, H., Suzuki, T., Tanaka, S., Atwood, W.J., and K. Nagashima. 2002. Oligosaccharides as receptors for JC Virus. J. Virol . 76:12992-13000.

Chen, B.J., and W.J. Atwood . 2002. Construction of a novel JCV/SV40 hybrid virus (JCSV) reveals a role for the JCV capsid in viral tropism. Virology 300:282-290.

Hofmann-Lehmann, R.; Vlasak, J.; Rasmussen, R. A.; Jiang, S.; Li, P. L.; Baba , T. W.; Montefiori, D. C.; Bernacky, B. J.; Rizvi, T. A.; Schmidt, R.; Hill, L. R.; Keeling, M. E.; Katinger, H.; Stiegler, G.; Cavacini, L. A.; Posner, M. R.; Ruprecht, R. M.; Postnatal pre- and postexposure passive immunization strategies: protection of neonatal macaques against oral simian-human immunodeficiency virus challenge. Journal of Medical Primatology. 31(3):109-119, June 2002.

Rasmussen, Robert A.; Hofmann-Lehmann, R.; Montefiori, D. C.; Li, P.-L.; Liska, V.; Vlasak, J.; Baba , T. W. ; Schmitz, J. E.; Kuroda, M. J.; Robinson, H. L.; McClure, H. M.; Lu, S.; Hu, S.-L.; Rizvi, T. A.; Ruprecht, R. M.; DNA prime/protein boost vaccine strategy in neonatal macaques against simian human immunodeficiency virus. Journal of Medical Primatology. 31(1):40-60, February 2002.

Barnett JB, Woods MN , Rosner B, McCormack C, Floyd L, Longcope C, and Gorbach SL : Waist-to-hip Ratio, body Mass Index, and Sex Hormone Levels Associates with Breast Cancer Risk in Premenopausal Caucasian Women. Journal of Medical Sciences , 2(4):170-176, July-August, 2002.

Brown, L ., Schultz, J., Forsberg, A., King, G., Kocik, S. and Butler, R.: Predictors of retention among HIV/Hemophilia health care professionals. General Hospital Psychiatry , 24: 48-54, 2002.

Currier J, Carpenter C , Daar E, Kotler D, and Wanke CA : Disease Management: Identifying and Managing Morphologic Complications of HIV and HAART. The AIDS Reader , 12:114-125, 2002.

Cu-Uvin S , Ko H, Jamieson DJ, Hogan JW , Schuman P, Anderson J, Klein RS. Prevalence, incidence, and persistence or recurrence of trichomoniasis among HIV-positive and among HIV-negative women at high risk for HIV infection. Clinical Infectious Diseases 2002; 34: 1406-1411.*

Jamieson DJ, Duerr A, Burk R, Klein RS, Paramsothy P, Schuman P, Cu-Uvin S , Shah K for the HIV Epidemiology Research Study Group. Characterization of genital human papilloma virus infection in women with or at risk for HIV infection. Am J Obstet Gynecol 186:21-7,2002.

Cu-Uvin S , Ko H; Jamieson D; Hogan J ; Schuman P; Anderson J; Klein R Prevalence, Incidence, and Persistence or Recurrence of Trichomoniasis among Human Immunodeficiency Virus (HIV)-Positive Women and among HIV-Negative Women at High Risk for HIV Infection. Clin Infect Dis . 34(10):1406-11,2002.

Larsson M, Wilkens DT, Fonteneau JF, Beadle TJ, Merritt MJ, Kost R, Haslett PAJ, Cu-Uvin S , Bhardwaj N, Shacklett B. Amplification of low-frequency antiviral CD8+ T-cell responses using autologous dendritic cells . AIDS 16(2); 171-180, 2002.

Silverberg MJ, Ahdieh L, Munoz A, Anastos K, Burk R, Cu-Uvin S , Duerr A, Greenblatt R, Klein RS, Massad S, Minkoff H, Muderspach L, Palefsky J, Piessens E, Schuman P, Watts H, Shah K. The impact of HIV infection and immunodeficiency on human papilloma virus type 6 or 11 infection and on genital warts. Sexually Trans Dis 29:427-435, 2002.

De Groot A.S. , H. Sbai, C. Saint Aubin, J.A. McMurry, William Martin . Immuno-informatics: Mining the genome for Vaccine Components. Immunology and Cell Biology. Immunology and Cell Biology (2002) 80, 255-269.

Williams SB, Flanigan TP , Cu-Uvin S , Mayer, K , Williams P, Ettore CA, Artenstein AW, Duerr A, VanCott TC: Human immunodeficiency virus (HIV)-specific antibody in cervicovaginal lavage specimens obtained from women infected with HIV type 1. Clinical Infectious Diseases 35(5)611-617, 2002.

Kozlowski P, Williams SB, Lynch R, Flanigan TP , Patterson R, Cu-Uvin S , Neutra MR. Differential induction of mucosal and systemic antibody responses in women after nasal,rectal, or vaginal immunization:influence of the menstrual cycle. J of Immunol 169: 566-574, 2002.

Williams S, Flanigan TP , Cu-Uvin S, Mayer K, Williams P, Ettore CA, Artenstein AW, Duerr A, Van Cott TC. Human Immunodeficiency Virus (HIV)-specific antibody in cervicovaginal lavage specimens obtained from women infected with HIV type 1. CID 35:611-617,2002.

Kumarasamy N, Mahajan A, Flanigan TP , Hemalatha R, Mayer KH, Carpenter CCJ , Thyagarajan SP, Solomon S. Total lymphocyte count (TLC) is a useful tool for the timing of opportunistic infection prophylaxis in India and other resource-constrained countries. J AIDS 31:378-83,2002.

Forrester JE , Spiegelman D, Tchetgen E, Knox TA , and Gorbach SL : Weight Loss and Body Composition Changes in Men and Women Infected with the HIV . American Journal of Clinical Nutrition , 76:1428-1434, 2002.

Ballard Lubelczyk RA , Friedmann PD , Lemon SC, Stein MD , Gerstein DR. HIV prevention services in correctional drug treatment programs: Do they change risk behaviors? AIDS Education and Prevention 2002;14(2):117-125.

Gill CJ , Griffith JL, Jacobson D , Skinner S, Gorbach SL , Wilson IB : Relationship of HIV Viral Loads, CD4 Counts and HAART Use to Health-Related Quality of Life. Journal of Acquired Immune Deficiency Syndromes, 30:485-492, 2002.

Visweshwar, I.; Sudheendra, R.; Thirumavalavan, V.; Greenberg , A. ; Cable, G.; Correlation Of Sepsis-Syndrome To The Degree Of Immunosuppression In Patients With Hiv Infection.. Journal of General Internal Medicine. 17 Supplement 1:132-133, April 2002.

Visweshwar, I.; Sudheendra, R.; Subramanian, K.; Thirumavalavan, V.; Greenberg , A . Biological Determinants To Measure Adherence To Treatment In Patients With Aids. Journal of General Internal Medicine. 17 Supplement 1:215, April 2002.

Skolnik, Paul R.; Rabbi, Mohammed F.; Mathys, Jean-Marie; Greenberg , Andrew S., Stimulation of Peroxisome Proliferator-Activated Receptors [alpha] and [gamma] Blocks HIV-1 Replication and TNF[alpha] Production in Acutely Infected Primary Blood Cells, Chronically Infected U1 Cells, and Alveolar Macrophages From HIV-Infected Subjects. JAIDS Journal of Acquired Immune Deficiency Syndromes. 31(1):1-10, September 1, 2002.

Hogan JW , Daniels MJ. A hierarchical modeling approach to analyzing longitudinal data with dropout and treatment cessation, with application to an AIDS clinical trial. Applied Statistics (JRSS-C) 2002;51 : 1-21.*

Sheu M, Hogan J , Allsworth J, Stein M , Vlahov D, Schoenbaum EE, Schuman P, Gardner L, Flanigan T . Continuity of medical care and risk of incarceration in HIV-positive and high-risk HIV-negative women. J Women's Health 2002;11(8):743-750.

Baigis J, Korniewicz DM, Chase G, Butz A, Jacobson DL , Wu AW: Effectiveness of a Home-based Exercise Intervention for HIV-infected Adults: A Randomized Trial . J Assoc Nurses AIDS Care , 13(2):33-45, 2002 Mar-Apr.

Wu AW, Jacobson DL , Frick KD, Clark R, Revicki D, Freedberg KA, Scott-Lennox J, Feinberg J: Validity and Responsiveness of the EuroQol as a Measure of Health-Related Quality of Life of People Enrolled in an AIDS Clinical Trial. Quality of Life Research , 11:273-282, 2002.

Mandelblatt JS, Lawrene WF, Womack SM, Jacobson D , Yi B, Hwang Y, Gold K, Barter J, Shah K. Benefits and costs of using HPV testing to screen for cervical cancer. JAMA 2002: 287; 2372-2380.

Wu AW, Jacobson DL , Frick KD, Clark R, Revicki D, Freedberg KA, Scott-Lennox J, Feinberg J. Validity and responsiveness of the EuroQol as a measure of health-related quality of life of people enrolled in an AIDS clinical trial. Quality of Life Research 2002:11;273-282.

Lally MA , Alvarez S, MacNevin R, Cenedella C, DiSpigno M, Harwell JI, Pugatch D, Flanigan TP . Acceptability of sexually transmitted infection screening among women in short-term substance abuse treatment. Sexual Transm Dis 29:752-755, 2002.

Leav, B . A., Mackay, M. R., Anyanwu, A., O'Connor, R. M ., Cevallos, A. M., Kindra, G., Rollins,N., Nelson, R. G., Bennish, M. L., Ward, H. D . Analysis of sequence diversity at the highly polymorphic Cpgp40/15 locus among Cryptosporidium isolates from HIV-infected children in South Africa. Infection and Immunity 70:3881-3890, 2002.

Spaulding A, Stephenson B, Macalino G , Ruby W, Clarke JG, Flanigan TP . Human immunodeficiency virus in correctional facilities: A Review. Clin Infect Dis 35:305-12, 2002.

Blackard JT, Cohen DE, Mayer KH : Human immunodeficiency virus superinfection and recombination: current state of knowledge and potential clinical consequences. Clinical Infectious Diseases 34(8):1108-14, 2002.

Clarke JG, Peipert JF, Hilliar SL, Heber W, Boardman L, Moench TR, Mayer K : Microflora Changes with the Use of a Vaginal Microbicide. Sexually Transmitted Diseases 29(5):288-293, 2002.

Colfax GN, Buchbinder SP, Cornelisso PGA, Vittinghoff E, Mayer K , Celum C: Sexual risk behaviors and implications for secondary HIV transmission during and after HIV seroconversion. AIDS 16(11):1529-35, 2002.

Downer MV, Hodge T, Smith DK, Qari SH, Schuman P, Mayer KH , Klein RS, Vlahov D, Gardner LI, McNicholl JM. Regional variation in CCR5D32 gene distribution among women from the U.S. HIV Epidemiology Research Study (HERS). Genes and Immunity 2002;3:295-8.

Gardner LI, Holmberg SD, Moore J, Arnsten JH, Mayer KH , Rompalo A, Schuman, Smith DK, for the HIV Epidemiology Research Study Group: Use of Highly Active Antiretroviral Therapy in HIV-Infected Women: Impact of HIV Specialist Care. Journal of Acquired Immune Deficiency Syndromes 29(1):69-75, 2002.

Koblin BA, Mayer K , Miwatha A, Brown-Peterside P, Holt R, Marmor M, Smith C, Chiasson MA: Doucing practices among women at high risk of HIV Infection in the United States. Sexually Transmitted Diseases 29(7):406-410, 2002.

Kumarasamy N, Mahajan A, Flanigan T , Hemalatha R, Mayer K , Carpenter C , Thyagarajan SP, Solomon S: The Total Lymphocyte count (TLC) is a useful tool for the timing of opportunistic infection prophylaxis in India and other resource-constrained countries. JAIDS 31(4):378-383, 2002.

Kumarasamy N, Flanigan TP , Mahajan AP, Carpenter CCJ , Mayer KH , Solomon S. Monitoring HIV treatment in the developing world. Reflections and Reactions. The Lancet , 2(11):656-657, 2002.

Seage GR III, Holte S, Gross M, Koblin B, Marmor M, Mayer KH , Lenderking WR: Case-Crossover Study of Partner and Situational Factors for Unprotected Sex. JAIDS 31(4):432-439, 2002.

Semba RD, Shah N, Klein RS, Mayer KH , Schuman P, Vaihov D, for the Human Immunodeficiency Virus Epidemiology Research Group: Prevalence and Cumulative Incidence of and Risk Factors for Anemia in a Multicenter Cohort Study of Human Immunodeficiency Virus-Infected and -Uninfected Women. Clinical Infectious Diseases 34(2):260-266, 2002.

Solomon SS, Solomon S, Rodriguez II, McGarvey ST , Ganesh AK, Thyagarajan SP, Mahajan AP, Mayer, KH : Dried blood spots (DBS): a valuable tool for HIV surveillance in developing/tropical countries. International Jounal of STD & AIDS 13(1):25-28, 2002.

Merchant RC , Mayer KH , Rich JD : Prophylactic panic. AIDS Clinical Care 14(6):55, 2002.

Merchant RC , Mayer KH , Browning CA: Nonoccupational HIV Post-exposure Prophylaxis: Guidelines for Rhode Island from the Brown University AIDS Program and the RI Department of Health. Medicine and Health\Rhode Islan d 93(8):244-248, 2002.

Miller TL : Nutrition Interventions in Pediatric HIV: It's Hard to Hit a Moving Target. Journal of Pediatric Gastroenterology and Nutrition , 34:353-356, 2002.

Mitty JA , Stone VE, Sands M, Macalino G, Flanigan T . Directly observed therapy for the treatment of people with human immunodeficiency virus infection: A work in progress. Clin Infect Dis 34:984-90, 2002. Cited in Current Topics

O'Connor, R.M ., Thorpe, C.M., Cevallos, A.M., Ward, H.D. Expression of the highly polymorphic Cryptosporidium parvum gp40/15 gene in genotype I and II isolates. Mol Biochem Parasitol 119:203-15, 2002.

Paul, R ., Cohen, R , Navia, B , Tashima, K . Relationships between neuropsychological function and neuroimaging in adults with human immunodeficiency virus type 1. Neuroscience and Biobehavioral Reviews , 26(3):353-359, 2002.

Pugatch, D ., Strong, L.L., Ramratnam, M., Levesque, B.G., Lally, M., Combs, C., Patterson D. and Brown, L .: HIV Risk behaviors in adolescent and young adult substance abusers undergoing treatment. Journal of HIV/AIDS Prevention and Education for Adolescents & Children , 4:43-54, 2002.

Pugatch D , Bennett L, Patterson D. HIV Medication Adherence in Adolescents: A Qualitative Study. J HIV/AIDS Prevention & Education for Adolescents and Children . 5:9-29, 2002

Ortiz G.M., Hu, J., Goldwitz, J.A., Chandwani, R., Larsson, M., Bonhoeffer, S., Ramratnam, B., Zhang, L., Markowitz, M., Nixon, D.F. (2002) Residual viral replication during antiretroviral therapy boosts human immunodeficiency virus type 1-specific CD8+ T-cell responses in subjects treated early after infection. J Virol. 76 :411-5.

Simon, V., Vanderhoeven, J., Hurley, A., Ramratnam, B., Louie, M., Dawson, K., Parkin, N., Boden, D., Markowitz, M. (2002) Evolving patterns of HIV-1 resistance to antiretroviral agents in newly infected individuals. AIDS. 11 :1511-19

Desai AA, Latta ET, Spaulding A, Rich JD , Flanigan TP . The importance of routine HIV testing in the incarcerated population: the Rhode Island experience. AIDS Ed Prev 14(5) (Suppl B):45-52, 2002.

Howard AA, Arnsten JH, Lo Y, Vlahov D, Rich JD , Schuman P, Stone VE, Smith DK, Schoenbaum EE, for the HER Study Group. A Prospective Study of Adherence and Viral Load in a Large Multi-Center Cohort of HIV-Infected Women. AIDS . 2002;16:2175-2182.

Rich JD , Martin EG, Macalino GE , Paul RV, McNamara S, Taylor LE . Pharmacist Support for Selling Syringes without a Prescription to Injection Drug Users in Rhode Island. Journal of the American Pharmaceutical Association (Wash). 2002 Nov-Dec;42(6 Suppl 2):S58-61.

Roubenoff R , Grinspoon S, Skolnik P, Tchetgen E, Abad L, Spiegelman D, Knox T , Gorbach S : Role of Cytokines and Testosterone in Regulating Lean Body Mass and Resting Energy Expenditure in HIV-Infected Men. American J Physiology: Endocrinology and Metabolism , 283:E138-E145, 2002.

Roubenoff R , Schmitz H, Bairos L, Layne J, Potts E, Cloutier G, and Denry F: Reduction of Abdominal Obesity in Lipodystrophy Associated with HIV Infection by Means of Diet and Exercise: Case Report and Proof of Principle. Clinical Infectious Diseases , 34:390-393, 2002.

Abad LW, Schmitz HR, Parker R, Roubenoff R : Cytokine Responses Differ by Compartment and Wasting Status in Patients with HIV Infection and Healthy Controls. Cytokine , 18:286-295, 2002.

Stein MD , Charuvastra A, Anderson B, Sobota M, Friedmann P . Alcohol and HIV risk-taking among intravenous drug users. Addict Behav 2002; 27:727-736.

Stein MD , Friedmann P . Need for medical and psychosocial services among injection drug users: A comparative study of needle exchange and methadone maintenance. Am J Addictions 2002;11:262-270.

Stein MD , Charuvastra A, Anderson BJ. Social support and zero sharing risk among hazardously drinking injection drug users. J Sub Abuse Treat 2002;23:225-230.

Stein MD , Anderson BJ. Injection frequency mediates health service use among persons with a history of drug injection. Drug Alcohol Depend , 2002;70:159-168.

Tang AM , Forrester JE , Spiegelman D, Knox TA, Tchetgen E, and Gorbach SL : Weight Loss and Survival in HIV-Positive Patients in t he Era of Highly Active Antiretroviral Therapy. Journal of Acquired Immune Deficiency Syndromes , 31:230-236, 2002.

Tashima KT, Flanigan TP , Kurpewski J, Melanson SM, Skolnik PR. Discordant human immunodeficiency virus type 1 drug resistance mutations, including K103N, observed in cerebrospinal fluid and plasma. Clin Infect Dis 35:82-3, 2002.

Wanke CA , Faultz JM, Shevitz AH , Phair JP, Kotler DP: Clinical Evaluation and Management of Meta-bolic and Morphologic Abnormalities Associated with HIV. Clinical Infectious Diseases , 32:248-259, 2002.

Wanke CA , Polsky B, Kotler D: Guidelines for Using Body Composition Measurements in Patients with HIV Infection. AIDS Patient Care and Standards , 16(8):375-388, 2002.

Tzipori, S. , and H. Ward . Cryptosporidiosis: biology, pathogenesis and disease. Microbes and Infection 4:1047-58, 2002.

Sestak, K., Ward, L.A., Sheoran, A., Feng, X., Akiyoshi, D.E., Ward, H.D., and Tzipori, S. Variability Among Cryptosporidium Parvum Genotype 1 And 2 Immunodominant Surface Glycoproteins. Parasite Immunology , 24:213-9, 2002.

Wilson IB , Jacobson D, Roubenoff R , Spiegelman D, Knox TA , Gorbach SL : Changes in Lean Body Mass are no better than Changes in Total Body Weight in Predicting Changes in Physical Functioning in Persons with HIV Infection. HIV Medicine , 3:263-270, 2002.

Wilson IB, Ding L, Hays RD, Shapiro MF, Bozzette SA, Cleary PD: HIV Patients' Experiences with Inpatient and Outpatient Care: Results of a National Survey. Medical Care , 40:1149-1160, 2002.

Landon BE, Wilson IB , Wenger NS, Cohen SE, Fichtenbaum CJ, Bozzette SA, Shapiro MF, Cleary, PD. Specialty training and specialization among physicians who treat HIV/AIDS in the United States. J Gen Intern Med 2002;17:12-22.*

Sagmeister M, Renner EL, Mullhaupt B, Wong JB . Simulation of hepatitis C based on a mandatory reporting system. European Journal of Gastroenterology & Hepatology 2002;14(1):25-34.

Stein K, Rosenberg W, Wong J . Cost effectiveness of combination therapy for hepatitis C: a decision analytic model. Gut 2002;50(2):253-8.

Wong JB . Nevens F. Cost-effectiveness of peginterferon alfa-2b plus ribavirin compared to interferon alfa-2b plus ribavirin as initial treatment of chronic hepatitis C in Belgium. Acta Gastroenterologica Belgica 2002;65(2):110-11.

Woods MN , Spiegelman D, Knox TA, Forrester JE , Connors JL, Skinner SC, Silva M, Kim JH, and Gorbach SL : Nutrient Intake and Body Weight in a Large HIV Cohort that Includes Women and Minorities. Journal of the American Dietetic Association , 102:203-211, 2002.