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Proteomics Specialized Equipment and Capability

Ciphergen ProteinChip Series 4000

Detailed Summary of the Ciphergen ProteinChip Series 4000

1) Superior quantization

  • Raster laser design for maximum spot coverage
  • Auto laser energy setting
    • Allows for standardization and efficient optimization of protocols
    • Focused troubleshooting
    • Improved ProteinChip Arrays and protocols

2) Enhanced Sensitivity

  • New high sensitivity detector
    • Average peptide mass has higher accuracy for peptide mapping
    • Sharper peak resolution to distinguish individual masses
    • Sharper resolution of high mass proteins
      • Highest dynamic range
      • Able to resolve individual masses up to 300 kDa
      • Only system currently able to resolve peaks from high molecular mass proteins
    • New Ion Source increases ion efficiency
    • New patented detector blanking reduces noise
      • Eliminates detector saturation from off scale signals such as that from the Energy Absorbing Matrix. 
    • Innovative flight tube design
      • Improves sensitivity by minimizing loss of ions as they travel the detector
      • Ions are focused resulting in excellent resolution for peptide maps for protein identification

3) Increased resolving power

  • Improved fractionation tools
  • Increased resolution of up to 3000 proteins
  • Biomarker Pathways
    • Protein interaction pathway discovery and quantitative assays
  • Improved quantization
    • Develop assays with broad dynamic range. 
    • Measure low and high abundant proteins within the same sample.
  • Raster laser design
    • Maximum spot coverage and total desorption of the sample
    • Improved detection of low abundant proteins.
Detailed Summary of the improved capabilities offered by the new CiphergenExpress Data Manager Software and CiphergenExpress Biomarker Analysis Module
  • CiphergenExpress Data Manager Software
    • Robust, client-server database centralizes data
    • Relational database ensures data integrity
    • Intuitive graphical user interface provides ease of use
    • Automated tracking of samples, processing protocols, and spectra provides increased efficiency in spectrum annotation
    • Required to run Ciphergen Biomarker Analysis Module
  • CiphergenExpress Biomarker Analysis Module
    • Advanced data handling capabilities provide powerful data management and processing capabilities
    • Powerful multivariate methods provide rapid analysis and comparison of multiple mass spectra to help identify biomarkers
    • Scalable architecture enables tracking and analysis of large numbers of spectra

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Phone: 401-444-7237 • email: AGarcia3@lifespan.org